Difference between revisions of "TSS:Hg 235017.1"
From referenceTSS
| Line 4: | Line 4: | ||
|STE20= | |STE20= | ||
|STK3= | |STK3= | ||
| − | |all_trans= | + | |all_trans=AK124665:42 ENST00000635152.1:-111 ENST00000547052.1:282 |
|chr=chr13 | |chr=chr13 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=42 |
|distance_to_tss=-21 | |distance_to_tss=-21 | ||
|end=98522146 | |end=98522146 | ||
| Line 13: | Line 13: | ||
|entrez_id=8428 | |entrez_id=8428 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=HEL-S-95 | + | |gene_alias=HEL-S-95{{!}}MST3{{!}}MST3B{{!}}STE20{{!}}STK3 |
|gene_description=serine/threonine kinase 24 | |gene_description=serine/threonine kinase 24 | ||
| − | |gene_id= | + | |gene_id=2972 |
| − | |gene_name= | + | |gene_name=BRF1 RNA polymerase III transcription initiation factor subunit |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:11551 |
| − | |gene_symbol= | + | |gene_symbol=BRF1 |
| − | |gene_synonyms= | + | |gene_synonyms=BRF TFIIIB90 hBRF |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:11551 |
|nearest_ensembl=ENSG00000102572 | |nearest_ensembl=ENSG00000102572 | ||
|nearest_promoter_id=NM_003576 | |nearest_promoter_id=NM_003576 | ||
|nearest_refseq=NM_003576 | |nearest_refseq=NM_003576 | ||
|nearest_unigene=Hs.508514 | |nearest_unigene=Hs.508514 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=98522145 | |start=98522145 | ||
|start_of_center_position=105222433 | |start_of_center_position=105222433 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AK124665 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_235017.1 | |tss_id=hg_235017.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=B3KWA2 |
}} | }} | ||
Revision as of 13:23, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 105222433 |
|---|---|
| End of the center position in the TSS region: | 105222434 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK124665 |
|---|---|
| Distance: | 42 |
| Num_trans: | 3 |
| All_trans: | AK124665:42 ENST00000635152.1:-111 ENST00000547052.1:282 |
TATA-Box annotation
| Distance to TSS: | -21 |
|---|---|
| Nearest PromoterID: | NM_003576 |
| Entrez ID: | 8428 |
| Nearest Unigene: | Hs.508514 |
| Nearest Refseq: | NM_003576 |
| Nearest Ensembl: | ENSG00000102572 |
| Gene Name: | BRF1 RNA polymerase III transcription initiation factor subunit |
| Gene Alias: | HEL-S-95|MST3|MST3B|STE20|STK3 |
| Gene Description: | serine/threonine kinase 24 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
