Difference between revisions of "TSS:Hg 236133.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=AB528593:-12 AK022582:-17 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-12 |
| − | |distance_to_tss= | + | |distance_to_tss=-1741 |
|end=630751 | |end=630751 | ||
|end_of_center_position=53238380 | |end_of_center_position=53238380 | ||
| − | |entrez_id= | + | |entrez_id=101928626 |
|gc_percent=0.393035 | |gc_percent=0.393035 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=uncharacterized LOC101928626 |
| − | |gene_name= | + | |gene_id=80205 |
| + | |gene_name=chromodomain helicase DNA binding protein 9 | ||
| + | |gene_source=HGNC:25701 | ||
| + | |gene_symbol=CHD9 | ||
| + | |gene_synonyms=BC022889 FLJ12178 KIAA0308 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |nearest_ensembl= | + | |hgnc_mgi_id=HGNC:25701 |
| − | |nearest_promoter_id= | + | |nearest_ensembl=ENSG00000230021 |
| − | |nearest_refseq= | + | |nearest_promoter_id=NR_125957 |
| − | |nearest_unigene= | + | |nearest_refseq=NR_125957 |
| + | |nearest_unigene=Hs.637667 | ||
|num_trans=2 | |num_trans=2 | ||
|species=human | |species=human | ||
| Line 22: | Line 27: | ||
|start_of_center_position=53238379 | |start_of_center_position=53238379 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-90(CCTTTTATGCTA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=AB528593 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_236133.1 | |tss_id=hg_236133.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 13:49, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 53238379 |
|---|---|
| End of the center position in the TSS region: | 53238380 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB528593 |
|---|---|
| Distance: | -12 |
| Num_trans: | 2 |
| All_trans: | AB528593:-12 AK022582:-17 |
TATA-Box annotation
| Distance to TSS: | -1741 |
|---|---|
| Nearest PromoterID: | NR_125957 |
| Entrez ID: | 101928626 |
| Nearest Unigene: | Hs.637667 |
| Nearest Refseq: | NR_125957 |
| Nearest Ensembl: | ENSG00000230021 |
| Gene Name: | chromodomain helicase DNA binding protein 9 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC101928626 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -90(CCTTTTATGCTA,+,0.00) |
