Difference between revisions of "TSS:Hg 236183.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|NM23H4= | |NM23H4= | ||
| − | |all_trans= | + | |all_trans=ENST00000562764.5:75 ENST00000258187.9:109 ENST00000569404.5:148 ENST00000569539.5:154 ENST00000564126.5:157 NM_020465:159 NM_001378342:159 NM_001378338:159 NM_001378345:159 NM_001378346:159 NM_001378339:159 ENST00000562725.5:160 ENST00000565304.5:167 ENST00000567667.5:169 ENST00000564207.5:-186 AB021172:189 ENST00000394282.8:468 |
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.18 | |cpg_percent=0.18 | ||
| − | |distance= | + | |distance=75 |
| − | |distance_to_tss= | + | |distance_to_tss=93 |
|end=397296 | |end=397296 | ||
|end_of_center_position=58463556 | |end_of_center_position=58463556 | ||
|entrez_id=4833 | |entrez_id=4833 | ||
|gc_percent=0.820896 | |gc_percent=0.820896 | ||
| − | |gene_alias=NDPK-D | + | |gene_alias=NDPK-D{{!}}NM23H4{{!}}nm23-H4 |
|gene_description=NME/NM23 nucleoside diphosphate kinase 4 | |gene_description=NME/NM23 nucleoside diphosphate kinase 4 | ||
| − | |gene_id= | + | |gene_id=65009 |
| − | |gene_name= | + | |gene_name=NDRG family member 4 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:14466 |
| − | |gene_symbol= | + | |gene_symbol=NDRG4 |
| − | |gene_synonyms= | + | |gene_synonyms=KIAA1180 SMAP-8 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:14466 |
|nearest_ensembl=ENSG00000103202 | |nearest_ensembl=ENSG00000103202 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001286435 |
|nearest_refseq=NM_005009 | |nearest_refseq=NM_005009 | ||
|nearest_unigene=Hs.9235 | |nearest_unigene=Hs.9235 | ||
|nm23-H4= | |nm23-H4= | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=397287 | |start=397287 | ||
|start_of_center_position=58463555 | |start_of_center_position=58463555 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000562764.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_236183.1 | |tss_id=hg_236183.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=H3BPT6 |
}} | }} | ||
Revision as of 13:50, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58463555 |
|---|---|
| End of the center position in the TSS region: | 58463556 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000562764.5 |
|---|---|
| Distance: | 75 |
| Num_trans: | 17 |
| All_trans: | ENST00000562764.5:75 ENST00000258187.9:109 ENST00000569404.5:148 ENST00000569539.5:154 ENST00000564126.5:157 NM_020465:159 NM_001378342:159 NM_001378338:159 NM_001378345:159 NM_001378346:159 NM_001378339:159 ENST00000562725.5:160 ENST00000565304.5:167 ENST00000567667.5:169 ENST00000564207.5:-186 AB021172:189 ENST00000394282.8:468 |
TATA-Box annotation
| Distance to TSS: | 93 |
|---|---|
| Nearest PromoterID: | NM_001286435 |
| Entrez ID: | 4833 |
| Nearest Unigene: | Hs.9235 |
| Nearest Refseq: | NM_005009 |
| Nearest Ensembl: | ENSG00000103202 |
| Gene Name: | NDRG family member 4 |
| Gene Alias: | NDPK-D|NM23H4|nm23-H4 |
| Gene Description: | NME/NM23 nucleoside diphosphate kinase 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.18 |
| GC%: | 0.820896 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
