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Difference between revisions of "TSS:Hg 236184.1"

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Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
 +
|all_trans=ENST00000394282.8:19 AB021172:-260 ENST00000566065.5:277 ENST00000564867.5:277 ENST00000567454.5:277 NM_001378336:277 NM_001130487:277 NM_001363869:277 NM_001378334:277 NM_001378333:277 NM_001378332:277 NM_001378335:277 ENST00000567667.5:-280 ENST00000565304.5:-282 ENST00000562725.5:-289 NM_020465:-290 NM_001378342:-290 NM_001378338:-290 NM_001378345:-290 NM_001378346:-290 NM_001378339:-290 ENST00000564126.5:-292 ENST00000569539.5:-295 ENST00000569578.5:296 ENST00000421602.6:296 AK126729:296 ENST00000561779.5:299 ENST00000569404.5:-301 ENST00000565430.5:301 ENST00000567063.5:301 ENST00000566041.5:308 ENST00000566061.5:313 AK126574:313 ENST00000258187.9:-340 ENST00000562764.5:-374 CR936733:400
 
|chr=chr1
 
|chr=chr1
 
|cpg_percent=0
 
|cpg_percent=0
|distance=
+
|distance=19
 
|distance_to_tss=46590
 
|distance_to_tss=46590
 
|end=64065618
 
|end=64065618
Line 10: Line 11:
 
|gene_alias=-
 
|gene_alias=-
 
|gene_description=ROR1 antisense RNA 1
 
|gene_description=ROR1 antisense RNA 1
|gene_name=ROR1-AS1
+
|gene_id=65009
 +
|gene_name=NDRG family member 4
 +
|gene_source=HGNC:14466
 +
|gene_symbol=NDRG4
 +
|gene_synonyms=KIAA1180 SMAP-8
 
|gene_type=ncRNA
 
|gene_type=ncRNA
 +
|hgnc_mgi_id=HGNC:14466
 
|nearest_ensembl=ENSG00000223949
 
|nearest_ensembl=ENSG00000223949
 
|nearest_promoter_id=NR_110666
 
|nearest_promoter_id=NR_110666
 
|nearest_refseq=NR_110665
 
|nearest_refseq=NR_110665
 
|nearest_unigene=Hs.680824
 
|nearest_unigene=Hs.680824
|num_trans=0
+
|num_trans=36
 
|species=human
 
|species=human
 
|start=64065611
 
|start=64065611
 
|start_of_center_position=58464004
 
|start_of_center_position=58464004
 
|strand=-
 
|strand=-
|transcript_name=
+
|transcript_name=ENST00000394282.8
 
|tss_classification=no
 
|tss_classification=no
 
|tss_id=hg_236184.1
 
|tss_id=hg_236184.1
 
|tss_score=1
 
|tss_score=1
 +
|uniprot_id=Q9ULP0
 
}}
 
}}

Revision as of 13:50, 17 June 2021

Basic information about the TSS


TSS ID:hg_236184.1
Species:human
Chr:chr1
TSS Classification:no
Start:64065611
End:64065618
Strand:-
TSS Score:1
Start of the center position in the TSS region:58464004
End of the center position in the TSS region:58464005



Gene and protein annotation


Transcript_name:ENST00000394282.8
Distance:19
GeneID:65009
HGNC/MGI_ID:HGNC:14466
UniProt_ID:Q9ULP0
Gene_name:NDRG family member 4
Gene_symbol:NDRG4
Gene_synonyms:KIAA1180 SMAP-8
Gene_source:HGNC:14466



Transcript annotation


Transcript_name:ENST00000394282.8
Distance:19
Num_trans:36
All_trans:ENST00000394282.8:19 AB021172:-260 ENST00000566065.5:277 ENST00000564867.5:277 ENST00000567454.5:277 NM_001378336:277 NM_001130487:277 NM_001363869:277 NM_001378334:277 NM_001378333:277 NM_001378332:277 NM_001378335:277 ENST00000567667.5:-280 ENST00000565304.5:-282 ENST00000562725.5:-289 NM_020465:-290 NM_001378342:-290 NM_001378338:-290 NM_001378345:-290 NM_001378346:-290 NM_001378339:-290 ENST00000564126.5:-292 ENST00000569539.5:-295 ENST00000569578.5:296 ENST00000421602.6:296 AK126729:296 ENST00000561779.5:299 ENST00000569404.5:-301 ENST00000565430.5:301 ENST00000567063.5:301 ENST00000566041.5:308 ENST00000566061.5:313 AK126574:313 ENST00000258187.9:-340 ENST00000562764.5:-374 CR936733:400



TATA-Box annotation


Distance to TSS:46590
Nearest PromoterID:NR_110666
Entrez ID:101927034
Nearest Unigene:Hs.680824
Nearest Refseq:NR_110665
Nearest Ensembl:ENSG00000223949
Gene Name:NDRG family member 4
Gene Alias:-
Gene Description:ROR1 antisense RNA 1
Gene Type:ncRNA
CpG%:0
GC%:0.472637
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):