Difference between revisions of "TSS:Hg 236184.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
+ | |all_trans=ENST00000394282.8:19 AB021172:-260 ENST00000566065.5:277 ENST00000564867.5:277 ENST00000567454.5:277 NM_001378336:277 NM_001130487:277 NM_001363869:277 NM_001378334:277 NM_001378333:277 NM_001378332:277 NM_001378335:277 ENST00000567667.5:-280 ENST00000565304.5:-282 ENST00000562725.5:-289 NM_020465:-290 NM_001378342:-290 NM_001378338:-290 NM_001378345:-290 NM_001378346:-290 NM_001378339:-290 ENST00000564126.5:-292 ENST00000569539.5:-295 ENST00000569578.5:296 ENST00000421602.6:296 AK126729:296 ENST00000561779.5:299 ENST00000569404.5:-301 ENST00000565430.5:301 ENST00000567063.5:301 ENST00000566041.5:308 ENST00000566061.5:313 AK126574:313 ENST00000258187.9:-340 ENST00000562764.5:-374 CR936733:400 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
− | |distance= | + | |distance=19 |
|distance_to_tss=46590 | |distance_to_tss=46590 | ||
|end=64065618 | |end=64065618 | ||
Line 10: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=ROR1 antisense RNA 1 | |gene_description=ROR1 antisense RNA 1 | ||
− | |gene_name= | + | |gene_id=65009 |
+ | |gene_name=NDRG family member 4 | ||
+ | |gene_source=HGNC:14466 | ||
+ | |gene_symbol=NDRG4 | ||
+ | |gene_synonyms=KIAA1180 SMAP-8 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
+ | |hgnc_mgi_id=HGNC:14466 | ||
|nearest_ensembl=ENSG00000223949 | |nearest_ensembl=ENSG00000223949 | ||
|nearest_promoter_id=NR_110666 | |nearest_promoter_id=NR_110666 | ||
|nearest_refseq=NR_110665 | |nearest_refseq=NR_110665 | ||
|nearest_unigene=Hs.680824 | |nearest_unigene=Hs.680824 | ||
− | |num_trans= | + | |num_trans=36 |
|species=human | |species=human | ||
|start=64065611 | |start=64065611 | ||
|start_of_center_position=58464004 | |start_of_center_position=58464004 | ||
|strand=- | |strand=- | ||
− | |transcript_name= | + | |transcript_name=ENST00000394282.8 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_236184.1 | |tss_id=hg_236184.1 | ||
|tss_score=1 | |tss_score=1 | ||
+ | |uniprot_id=Q9ULP0 | ||
}} | }} |
Revision as of 13:50, 17 June 2021
Basic information about the TSS
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Start of the center position in the TSS region: | 58464004 |
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End of the center position in the TSS region: | 58464005 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | ENST00000394282.8 |
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Distance: | 19 |
Num_trans: | 36 |
All_trans: | ENST00000394282.8:19 AB021172:-260 ENST00000566065.5:277 ENST00000564867.5:277 ENST00000567454.5:277 NM_001378336:277 NM_001130487:277 NM_001363869:277 NM_001378334:277 NM_001378333:277 NM_001378332:277 NM_001378335:277 ENST00000567667.5:-280 ENST00000565304.5:-282 ENST00000562725.5:-289 NM_020465:-290 NM_001378342:-290 NM_001378338:-290 NM_001378345:-290 NM_001378346:-290 NM_001378339:-290 ENST00000564126.5:-292 ENST00000569539.5:-295 ENST00000569578.5:296 ENST00000421602.6:296 AK126729:296 ENST00000561779.5:299 ENST00000569404.5:-301 ENST00000565430.5:301 ENST00000567063.5:301 ENST00000566041.5:308 ENST00000566061.5:313 AK126574:313 ENST00000258187.9:-340 ENST00000562764.5:-374 CR936733:400 |
TATA-Box annotation
Distance to TSS: | 46590 |
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Nearest PromoterID: | NR_110666 |
Entrez ID: | 101927034 |
Nearest Unigene: | Hs.680824 |
Nearest Refseq: | NR_110665 |
Nearest Ensembl: | ENSG00000223949 |
Gene Name: | NDRG family member 4 |
Gene Alias: | - |
Gene Description: | ROR1 antisense RNA 1 |
Gene Type: | ncRNA |
CpG%: | 0 |
GC%: | 0.472637 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |