Difference between revisions of "TSS:Hg 237197.1"
From referenceTSS
| Line 4: | Line 4: | ||
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=84 | |distance_to_tss=84 | ||
|end=3453858 | |end=3453858 | ||
| Line 10: | Line 10: | ||
|entrez_id=7050 | |entrez_id=7050 | ||
|gc_percent=0.41791 | |gc_percent=0.41791 | ||
| − | |gene_alias=HPE4 | + | |gene_alias=HPE4{{!}}TGIF |
|gene_description=TGFB induced factor homeobox 1 | |gene_description=TGFB induced factor homeobox 1 | ||
|gene_id=7050 | |gene_id=7050 | ||
| − | |gene_name= | + | |gene_name=TGIF1 |
|gene_source=HGNC:11776 | |gene_source=HGNC:11776 | ||
|gene_symbol=TGIF1 | |gene_symbol=TGIF1 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_003244 | |nearest_refseq=NM_003244 | ||
|nearest_unigene=Hs.373550 | |nearest_unigene=Hs.373550 | ||
| − | |num_trans= | + | |num_trans=0 |
|species=human | |species=human | ||
|start=3453857 | |start=3453857 | ||
|start_of_center_position=8868013 | |start_of_center_position=8868013 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-12(TTTTTTAAAGTG,+,0.00) |
| − | |transcript_name= | + | |transcript_name= |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_237197.1 | |tss_id=hg_237197.1 | ||
Revision as of 14:14, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 8868013 |
|---|---|
| End of the center position in the TSS region: | 8868014 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: | ENST00000549468.5:-84 ENST00000400167.6:-84 NM_173211:-84 uc060myg.1:-84 uc002kmb.4:-84 |
TATA-Box annotation
| Distance to TSS: | 84 |
|---|---|
| Nearest PromoterID: | NM_173211 |
| Entrez ID: | 7050 |
| Nearest Unigene: | Hs.373550 |
| Nearest Refseq: | NM_003244 |
| Nearest Ensembl: | ENSG00000177426 |
| Gene Name: | TGIF1 |
| Gene Alias: | HPE4|TGIF |
| Gene Description: | TGFB induced factor homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.41791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -12(TTTTTTAAAGTG,+,0.00) |
