Difference between revisions of "TSS:Hg 238112.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HH0048= | |HH0048= | ||
|KLP-11= | |KLP-11= | ||
| − | |all_trans= | + | |all_trans=ENST00000371196.6:13 AY071919:13 DQ294738:15 ENST00000609232.5:-60 ENST00000429804.7:-60 ENST00000422869.6:-60 ENST00000608425.5:-60 ENST00000481655.2:-60 NM_001269040:-60 NM_001269042:-60 NM_001269046:-60 NM_080618:-60 NM_001269047:-60 NM_001269045:-60 NM_001269051:-60 DQ778108:-60 DQ778109:-60 DQ778112:-60 DQ778122:-60 DQ778123:-60 DQ778113:-60 ENST00000243914.7:383 AK128070:383 NM_001269050:452 NM_001269055:452 AK313990:452 BC060763:463 NM_001269043:465 NM_001269054:465 NM_001269049:465 ENST00000423479.7:485 ENST00000502686.6:485 ENST00000433949.7:485 ENST00000539382.5:485 ENST00000608903.5:485 ENST00000608858.5:485 ENST00000608108.1:485 DQ778111:494 AF336042:494 DQ778124:494 DQ778125:494 DQ778126:494 DQ778127:494 DQ778128:494 DQ778129:494 |
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=13 |
|distance_to_tss=32048 | |distance_to_tss=32048 | ||
|end=32309699 | |end=32309699 | ||
| Line 11: | Line 11: | ||
|entrez_id=9371 | |entrez_id=9371 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
| − | |gene_alias=FLA8 | + | |gene_alias=FLA8{{!}}HH0048{{!}}KLP-11 |
|gene_description=kinesin family member 3B | |gene_description=kinesin family member 3B | ||
| − | |gene_id= | + | |gene_id=140690 |
| − | |gene_name= | + | |gene_name=CCCTC-binding factor like |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:16234 |
| − | |gene_symbol= | + | |gene_symbol=CTCFL |
| − | |gene_synonyms= | + | |gene_synonyms=BORIS CT27 dJ579F20.2 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:16234 |
|nearest_ensembl=ENSG00000101350 | |nearest_ensembl=ENSG00000101350 | ||
|nearest_promoter_id=NM_004798 | |nearest_promoter_id=NM_004798 | ||
|nearest_refseq=NM_004798 | |nearest_refseq=NM_004798 | ||
|nearest_unigene=Hs.369670 | |nearest_unigene=Hs.369670 | ||
| − | |num_trans= | + | |num_trans=45 |
|species=human | |species=human | ||
|start=32309698 | |start=32309698 | ||
|start_of_center_position=57525591 | |start_of_center_position=57525591 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000371196.6 AY071919 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_238112.1 | |tss_id=hg_238112.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q8NI51 |
}} | }} | ||
Revision as of 14:35, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 57525591 |
|---|---|
| End of the center position in the TSS region: | 57525592 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000371196.6 AY071919 |
|---|---|
| Distance: | 13 |
| Num_trans: | 45 |
| All_trans: | ENST00000371196.6:13 AY071919:13 DQ294738:15 ENST00000609232.5:-60 ENST00000429804.7:-60 ENST00000422869.6:-60 ENST00000608425.5:-60 ENST00000481655.2:-60 NM_001269040:-60 NM_001269042:-60 NM_001269046:-60 NM_080618:-60 NM_001269047:-60 NM_001269045:-60 NM_001269051:-60 DQ778108:-60 DQ778109:-60 DQ778112:-60 DQ778122:-60 DQ778123:-60 DQ778113:-60 ENST00000243914.7:383 AK128070:383 NM_001269050:452 NM_001269055:452 AK313990:452 BC060763:463 NM_001269043:465 NM_001269054:465 NM_001269049:465 ENST00000423479.7:485 ENST00000502686.6:485 ENST00000433949.7:485 ENST00000539382.5:485 ENST00000608903.5:485 ENST00000608858.5:485 ENST00000608108.1:485 DQ778111:494 AF336042:494 DQ778124:494 DQ778125:494 DQ778126:494 DQ778127:494 DQ778128:494 DQ778129:494 |
TATA-Box annotation
| Distance to TSS: | 32048 |
|---|---|
| Nearest PromoterID: | NM_004798 |
| Entrez ID: | 9371 |
| Nearest Unigene: | Hs.369670 |
| Nearest Refseq: | NM_004798 |
| Nearest Ensembl: | ENSG00000101350 |
| Gene Name: | CCCTC-binding factor like |
| Gene Alias: | FLA8|HH0048|KLP-11 |
| Gene Description: | kinesin family member 3B |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
