Difference between revisions of "TSS:Hg 238262.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CTCF-T= | |CTCF-T= | ||
|HMGB1L1= | |HMGB1L1= | ||
| − | |all_trans= | + | |all_trans=X06989:-6 ENST00000474136.5:-14 BC004369:-14 ENST00000354192.7:-15 AF282245:-15 BC065529:-19 BC065523:-19 MA353526:26 LF214042:-34 MA449619:-34 ENST00000348990.9:-35 Y00264:-35 AK297412:-35 AK294534:-35 AK298861:-35 ENST00000346798.8:-38 NM_001136129:-38 NM_000484:-38 NM_201414:-38 NM_201413:-38 NM_001204302:-38 NM_001204301:-38 NM_001204303:-38 NM_001136130:-38 NM_001385253:-38 M35675:-38 AK297229:48 AK312326:48 ENST00000357903.7:-55 ENST00000358918.7:65 ENST00000439274.6:78 LF385141:-88 MA620718:-88 HM005315:92 AB384791:107 EU832797:112 GQ129348:112 KJ901289:112 LF213391:257 MA448968:257 LF210650:-328 MA446227:-328 ENST00000359726.7:-396 NM_001136131:-396 LF385472:-396 MA621049:-396 AK296229:-396 |
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|dJ579F20.2= | |dJ579F20.2= | ||
| − | |distance= | + | |distance=-6 |
|distance_to_tss=35741 | |distance_to_tss=35741 | ||
|end=57489128 | |end=57489128 | ||
| Line 13: | Line 13: | ||
|entrez_id=140690 | |entrez_id=140690 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias=BORIS | + | |gene_alias=BORIS{{!}}CT27{{!}}CTCF-T{{!}}HMGB1L1{{!}}dJ579F20.2 |
|gene_description=CCCTC-binding factor like | |gene_description=CCCTC-binding factor like | ||
| − | |gene_id= | + | |gene_id=351 |
| − | |gene_name= | + | |gene_name=amyloid beta precursor protein |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:620 |
| − | |gene_symbol= | + | |gene_symbol=APP |
| − | |gene_synonyms= | + | |gene_synonyms=alpha-sAPP |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:620 |
|nearest_ensembl=ENSG00000124092 | |nearest_ensembl=ENSG00000124092 | ||
|nearest_promoter_id=NM_001269041 | |nearest_promoter_id=NM_001269041 | ||
|nearest_refseq=NM_080618 | |nearest_refseq=NM_080618 | ||
|nearest_unigene=Hs.131543 | |nearest_unigene=Hs.131543 | ||
| − | |num_trans= | + | |num_trans=47 |
|species=human | |species=human | ||
|start=57489123 | |start=57489123 | ||
|start_of_center_position=26170731 | |start_of_center_position=26170731 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=X06989 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_238262.1 | |tss_id=hg_238262.1 | ||
Revision as of 14:38, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26170731 |
|---|---|
| End of the center position in the TSS region: | 26170732 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | X06989 |
|---|---|
| Distance: | -6 |
| Num_trans: | 47 |
| All_trans: | X06989:-6 ENST00000474136.5:-14 BC004369:-14 ENST00000354192.7:-15 AF282245:-15 BC065529:-19 BC065523:-19 MA353526:26 LF214042:-34 MA449619:-34 ENST00000348990.9:-35 Y00264:-35 AK297412:-35 AK294534:-35 AK298861:-35 ENST00000346798.8:-38 NM_001136129:-38 NM_000484:-38 NM_201414:-38 NM_201413:-38 NM_001204302:-38 NM_001204301:-38 NM_001204303:-38 NM_001136130:-38 NM_001385253:-38 M35675:-38 AK297229:48 AK312326:48 ENST00000357903.7:-55 ENST00000358918.7:65 ENST00000439274.6:78 LF385141:-88 MA620718:-88 HM005315:92 AB384791:107 EU832797:112 GQ129348:112 KJ901289:112 LF213391:257 MA448968:257 LF210650:-328 MA446227:-328 ENST00000359726.7:-396 NM_001136131:-396 LF385472:-396 MA621049:-396 AK296229:-396 |
TATA-Box annotation
| Distance to TSS: | 35741 |
|---|---|
| Nearest PromoterID: | NM_001269041 |
| Entrez ID: | 140690 |
| Nearest Unigene: | Hs.131543 |
| Nearest Refseq: | NM_080618 |
| Nearest Ensembl: | ENSG00000124092 |
| Gene Name: | amyloid beta precursor protein |
| Gene Alias: | BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 |
| Gene Description: | CCCTC-binding factor like |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
