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Difference between revisions of "TSS:Hg 238263.1"

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Line 3: Line 3:
 
|CTCF-T=
 
|CTCF-T=
 
|HMGB1L1=
 
|HMGB1L1=
−
|all_trans=ENST00000608263.5:-33 ENST00000426658.6:-33 ENST00000422109.6:-33 ENST00000432255.6:-33 ENST00000608720.5:-33 ENST00000607923.5:-33 ENST00000608158.5:-33 NM_001269041:-33 NM_001269044:-33 NR_072975:-33 NM_001269048:-33 NM_001269052:-33 uc010gix.2:-33 uc061xym.1:-33 uc061xyn.1:-33 uc010gjh.2:-33 uc021wfe.2:-33 uc061xyo.1:-33 uc010gjk.3:-33 DQ778110:-33 DQ778115:-33 DQ778116:-33 DQ778117:-33 DQ778118:-33 DQ778121:-33 DQ778119:-33 DQ778120:-33 DQ778114:-33 BC130486:-249 DQ778111:-264 AF336042:-264 DQ778124:-264 DQ778125:-264 DQ778126:-264 DQ778127:-264 DQ778128:-264 DQ778129:-264 ENST00000423479.7:-273 ENST00000502686.6:-273 ENST00000433949.7:-273 ENST00000539382.5:-273 ENST00000608903.5:-273 ENST00000608858.5:-273 ENST00000608108.1:-273 NM_001269050:-273 NM_001269055:-273 uc010giw.2:-273 uc010gjf.4:-273 uc010gjg.5:-273 uc010gji.3:-273 uc031rui.2:-273 uc061xyp.1:-273 uc021wff.2:-273 NM_001269043:-293 NM_001269054:-293 NM_001269049:-293 BC060763:-295 AK313990:-306 ENST00000243914.7:-375 uc010gjb.3:-375 AK128070:-375
+
|all_trans=X06989:-4 ENST00000474136.5:-12 BC004369:-12 ENST00000354192.7:-13 AF282245:-13 BC065529:-17 BC065523:-17 MA353526:27 LF214042:-32 MA449619:-32 ENST00000348990.9:-33 Y00264:-33 AK297412:-33 AK294534:-33 AK298861:-33 ENST00000346798.8:-36 NM_001136129:-36 NM_000484:-36 NM_201414:-36 NM_201413:-36 NM_001204302:-36 NM_001204301:-36 NM_001204303:-36 NM_001136130:-36 NM_001385253:-36 M35675:-36 AK297229:49 AK312326:49 ENST00000357903.7:-53 ENST00000358918.7:66 ENST00000439274.6:79 LF385141:-86 MA620718:-86 HM005315:93 AB384791:108 EU832797:113 GQ129348:113 KJ901289:113 LF213391:258 MA448968:258 LF210650:-326 MA446227:-326 ENST00000359726.7:-394 NM_001136131:-394 LF385472:-394 MA621049:-394 AK296229:-394
 
|chr=chr20
 
|chr=chr20
 
|cpg_percent=0.05
 
|cpg_percent=0.05
 
|dJ579F20.2=
 
|dJ579F20.2=
−
|distance=-33
+
|distance=-4
 
|distance_to_tss=33
 
|distance_to_tss=33
 
|end=57524834
 
|end=57524834
Line 13: Line 13:
 
|entrez_id=140690
 
|entrez_id=140690
 
|gc_percent=0.711443
 
|gc_percent=0.711443
−
|gene_alias=BORIS
+
|gene_alias=BORIS{{!}}CT27{{!}}CTCF-T{{!}}HMGB1L1{{!}}dJ579F20.2
 
|gene_description=CCCTC-binding factor like
 
|gene_description=CCCTC-binding factor like
−
|gene_id=140690
+
|gene_id=351
−
|gene_name=CCCTC-binding factor like
+
|gene_name=amyloid beta precursor protein
−
|gene_source=HGNC:16234
+
|gene_source=HGNC:620
−
|gene_symbol=CTCFL
+
|gene_symbol=APP
−
|gene_synonyms=BORIS CT27 dJ579F20.2
+
|gene_synonyms=alpha-sAPP
 
|gene_type=protein-coding
 
|gene_type=protein-coding
−
|hgnc_mgi_id=HGNC:16234
+
|hgnc_mgi_id=HGNC:620
 
|nearest_ensembl=ENSG00000124092
 
|nearest_ensembl=ENSG00000124092
 
|nearest_promoter_id=NM_001269041
 
|nearest_promoter_id=NM_001269041
 
|nearest_refseq=NM_080618
 
|nearest_refseq=NM_080618
 
|nearest_unigene=Hs.131543
 
|nearest_unigene=Hs.131543
−
|num_trans=61
+
|num_trans=47
 
|species=human
 
|species=human
 
|start=57524833
 
|start=57524833
 
|start_of_center_position=26170733
 
|start_of_center_position=26170733
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000608263.5 ENST00000426658.6 ENST00000422109.6 ENST00000432255.6 ENST00000608720.5 ENST00000607923.5 ENST00000608158.5 NM_001269041 NM_001269044 NR_072975 NM_001269048 NM_001269052 uc010gix.2 uc061xym.1 uc061xyn.1 uc010gjh.2 uc021wfe.2 uc061xyo.1 uc010gjk.3 DQ778110 DQ778115 DQ778116 DQ778117 DQ778118 DQ778121 DQ778119 DQ778120 DQ778114
+
|transcript_name=X06989
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_238263.1
 
|tss_id=hg_238263.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=A6XGM4 A6XGM5 F5H2V8 Q8NI51 V9GYX4 V9GZ46
+
|uniprot_id=
 
}}
 
}}

Revision as of 14:38, 17 June 2021

Basic information about the TSS

TSS ID:hg_238263.1
Species:human
Chr:chr20
TSS Classification:yes
Start:57524833
End:57524834
Strand:-
TSS Score:1
Start of the center position in the TSS region:26170733
End of the center position in the TSS region:26170734



Gene and protein annotation

Transcript_name:X06989
Distance:-4
GeneID:351
HGNC/MGI_ID:HGNC:620
UniProt_ID:
Gene_name:amyloid beta precursor protein
Gene_symbol:APP
Gene_synonyms:alpha-sAPP
Gene_source:HGNC:620



Transcript annotation

Transcript_name:X06989
Distance:-4
Num_trans:47
All_trans:X06989:-4 ENST00000474136.5:-12 BC004369:-12 ENST00000354192.7:-13 AF282245:-13 BC065529:-17 BC065523:-17 MA353526:27 LF214042:-32 MA449619:-32 ENST00000348990.9:-33 Y00264:-33 AK297412:-33 AK294534:-33 AK298861:-33 ENST00000346798.8:-36 NM_001136129:-36 NM_000484:-36 NM_201414:-36 NM_201413:-36 NM_001204302:-36 NM_001204301:-36 NM_001204303:-36 NM_001136130:-36 NM_001385253:-36 M35675:-36 AK297229:49 AK312326:49 ENST00000357903.7:-53 ENST00000358918.7:66 ENST00000439274.6:79 LF385141:-86 MA620718:-86 HM005315:93 AB384791:108 EU832797:113 GQ129348:113 KJ901289:113 LF213391:258 MA448968:258 LF210650:-326 MA446227:-326 ENST00000359726.7:-394 NM_001136131:-394 LF385472:-394 MA621049:-394 AK296229:-394



TATA-Box annotation

Distance to TSS:33
Nearest PromoterID:NM_001269041
Entrez ID:140690
Nearest Unigene:Hs.131543
Nearest Refseq:NM_080618
Nearest Ensembl:ENSG00000124092
Gene Name:amyloid beta precursor protein
Gene Alias:BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2
Gene Description:CCCTC-binding factor like
Gene Type:protein-coding
CpG%:0.05
GC%:0.711443
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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