Difference between revisions of "TSS:Hg 238265.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|TMEPAI= | |TMEPAI= | ||
| − | |all_trans= | + | |all_trans=ENST00000357903.7:9 LF385141:-22 MA620718:-22 ENST00000346798.8:26 NM_001136129:26 NM_000484:26 NM_201414:26 NM_201413:26 NM_001204302:26 NM_001204301:26 NM_001204303:26 NM_001136130:26 NM_001385253:26 M35675:26 ENST00000348990.9:29 Y00264:29 AK297412:29 AK294534:29 AK298861:29 LF214042:30 MA449619:30 BC065529:45 BC065523:45 ENST00000354192.7:49 AF282245:49 ENST00000474136.5:50 BC004369:50 X06989:58 MA353526:90 AK297229:112 AK312326:112 ENST00000358918.7:129 ENST00000439274.6:142 HM005315:156 AB384791:171 EU832797:176 GQ129348:176 KJ901289:176 LF210650:-262 MA446227:-262 LF213391:321 MA448968:321 ENST00000359726.7:-330 NM_001136131:-330 LF385472:-330 MA621049:-330 AK296229:-330 |
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| − | |distance= | + | |distance=9 |
| − | |distance_to_tss= | + | |distance_to_tss=79 |
|end=57709944 | |end=57709944 | ||
|end_of_center_position=26170797 | |end_of_center_position=26170797 | ||
|entrez_id=56937 | |entrez_id=56937 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=STAG1 | + | |gene_alias=STAG1{{!}}TMEPAI |
| − | |gene_description= | + | |gene_description=prostate transmembrane protein, androgen induced 1 |
| − | |gene_id= | + | |gene_id=351 |
| − | |gene_name= | + | |gene_name=amyloid beta precursor protein |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:620 |
| − | |gene_symbol= | + | |gene_symbol=APP |
| − | |gene_synonyms= | + | |gene_synonyms=alpha-sAPP |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:620 |
|nearest_ensembl=ENSG00000124225 | |nearest_ensembl=ENSG00000124225 | ||
|nearest_promoter_id=NM_020182 | |nearest_promoter_id=NM_020182 | ||
|nearest_refseq=NM_020182 | |nearest_refseq=NM_020182 | ||
|nearest_unigene=Hs.517155 | |nearest_unigene=Hs.517155 | ||
| − | |num_trans= | + | |num_trans=47 |
|species=human | |species=human | ||
|start=57709927 | |start=57709927 | ||
|start_of_center_position=26170796 | |start_of_center_position=26170796 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000357903.7 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_238265.1 | |tss_id=hg_238265.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P05067 |
}} | }} | ||
Revision as of 14:38, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26170796 |
|---|---|
| End of the center position in the TSS region: | 26170797 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000357903.7 |
|---|---|
| Distance: | 9 |
| Num_trans: | 47 |
| All_trans: | ENST00000357903.7:9 LF385141:-22 MA620718:-22 ENST00000346798.8:26 NM_001136129:26 NM_000484:26 NM_201414:26 NM_201413:26 NM_001204302:26 NM_001204301:26 NM_001204303:26 NM_001136130:26 NM_001385253:26 M35675:26 ENST00000348990.9:29 Y00264:29 AK297412:29 AK294534:29 AK298861:29 LF214042:30 MA449619:30 BC065529:45 BC065523:45 ENST00000354192.7:49 AF282245:49 ENST00000474136.5:50 BC004369:50 X06989:58 MA353526:90 AK297229:112 AK312326:112 ENST00000358918.7:129 ENST00000439274.6:142 HM005315:156 AB384791:171 EU832797:176 GQ129348:176 KJ901289:176 LF210650:-262 MA446227:-262 LF213391:321 MA448968:321 ENST00000359726.7:-330 NM_001136131:-330 LF385472:-330 MA621049:-330 AK296229:-330 |
TATA-Box annotation
| Distance to TSS: | 79 |
|---|---|
| Nearest PromoterID: | NM_020182 |
| Entrez ID: | 56937 |
| Nearest Unigene: | Hs.517155 |
| Nearest Refseq: | NM_020182 |
| Nearest Ensembl: | ENSG00000124225 |
| Gene Name: | amyloid beta precursor protein |
| Gene Alias: | STAG1|TMEPAI |
| Gene Description: | prostate transmembrane protein, androgen induced 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
