Difference between revisions of "TSS:Hg 239176.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=KJ903875:-37 HQ258521:-38 KJ903876:-38 BC090854:375 |
|chr=chr21 | |chr=chr21 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance= | + | |distance=-37 |
| − | |distance_to_tss=- | + | |distance_to_tss=-3 |
|end=8439822 | |end=8439822 | ||
|end_of_center_position=210154546 | |end_of_center_position=210154546 | ||
| − | |entrez_id= | + | |entrez_id=106632260 |
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias= | + | |gene_alias=RNA5-8S4 |
| − | |gene_description= | + | |gene_description=RNA, 5.8S ribosomal N1 |
|gene_id=100008587 | |gene_id=100008587 | ||
| − | |gene_name= | + | |gene_name=RNA5-8SN1 |
|gene_source=HGNC:37660 | |gene_source=HGNC:37660 | ||
|gene_symbol=RNA5-8S5 | |gene_symbol=RNA5-8S5 | ||
| Line 18: | Line 18: | ||
|gene_type=rRNA | |gene_type=rRNA | ||
|hgnc_mgi_id=HGNC:37660 | |hgnc_mgi_id=HGNC:37660 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000278189 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_145821 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_145821 |
| − | |nearest_unigene= | + | |nearest_unigene= |
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=8439815 | |start=8439815 | ||
|start_of_center_position=210154545 | |start_of_center_position=210154545 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=KJ903875 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_239176.1 | |tss_id=hg_239176.1 | ||
Revision as of 14:59, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 210154545 |
|---|---|
| End of the center position in the TSS region: | 210154546 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | KJ903875 |
|---|---|
| Distance: | -37 |
| Num_trans: | 4 |
| All_trans: | KJ903875:-37 HQ258521:-38 KJ903876:-38 BC090854:375 |
TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NR_145821 |
| Entrez ID: | 106632260 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_145821 |
| Nearest Ensembl: | ENSG00000278189 |
| Gene Name: | RNA5-8SN1 |
| Gene Alias: | RNA5-8S4 |
| Gene Description: | RNA, 5.8S ribosomal N1 |
| Gene Type: | rRNA |
| CpG%: | 0.105 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
