Difference between revisions of "TSS:Hg 240853.1"
From referenceTSS
| Line 6: | Line 6: | ||
|RNASELI= | |RNASELI= | ||
|RNS4I= | |RNS4I= | ||
| − | |all_trans= | + | |all_trans=ENST00000510197.5:237 NM_001242936:237 AK124936:237 ENST00000512895.5:301 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=237 |
| − | |distance_to_tss= | + | |distance_to_tss=282 |
|end=145097914 | |end=145097914 | ||
|end_of_center_position=76213801 | |end_of_center_position=76213801 | ||
| − | |entrez_id= | + | |entrez_id=10393 |
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| − | |gene_alias= | + | |gene_alias=APC10{{!}}DOC1 |
| − | |gene_description= | + | |gene_description=anaphase promoting complex subunit 10 |
| − | |gene_id= | + | |gene_id=100129583 |
| − | |gene_name= | + | |gene_name=family with sequence similarity 47 member E |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:34343 |
| − | |gene_symbol= | + | |gene_symbol=FAM47E |
| − | |gene_synonyms= | + | |gene_synonyms=FLJ42946 LOC100129583 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:34343 |
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000164162 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001256706 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_014885 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.480876 |
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=145097913 | |start=145097913 | ||
|start_of_center_position=76213800 | |start_of_center_position=76213800 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000510197.5 NM_001242936 AK124936 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_240853.1 | |tss_id=hg_240853.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q6ZV65 |
}} | }} | ||
Revision as of 15:38, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 76213800 |
|---|---|
| End of the center position in the TSS region: | 76213801 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000510197.5 NM_001242936 AK124936 |
|---|---|
| Distance: | 237 |
| Num_trans: | 4 |
| All_trans: | ENST00000510197.5:237 NM_001242936:237 AK124936:237 ENST00000512895.5:301 |
TATA-Box annotation
| Distance to TSS: | 282 |
|---|---|
| Nearest PromoterID: | NM_001256706 |
| Entrez ID: | 10393 |
| Nearest Unigene: | Hs.480876 |
| Nearest Refseq: | NM_014885 |
| Nearest Ensembl: | ENSG00000164162 |
| Gene Name: | family with sequence similarity 47 member E |
| Gene Alias: | APC10|DOC1 |
| Gene Description: | anaphase promoting complex subunit 10 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
