Difference between revisions of "TSS:Hg 242192.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NM_001163149:-145 ENST00000403685.5:-154 X87175:-154 ENST00000431887.5:-289 ENST00000242066.9:-330 ENST00000421381.5:-330 NM_001163148:-330 NM_001370555:389 NR_120445:393 ENST00000443137.5:405 BC045776:405 AK294755:458 | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=-145 |
|distance_to_tss=-275 | |distance_to_tss=-275 | ||
|end=35470242 | |end=35470242 | ||
| Line 10: | Line 11: | ||
|gene_alias=hsa-mir-7111 | |gene_alias=hsa-mir-7111 | ||
|gene_description=microRNA 7111 | |gene_description=microRNA 7111 | ||
| − | |gene_name= | + | |gene_id=2115 |
| + | |gene_name=ETS variant transcription factor 1 | ||
| + | |gene_source=HGNC:3490 | ||
| + | |gene_symbol=ETV1 | ||
| + | |gene_synonyms=ER81 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:3490 | ||
|nearest_ensembl=ENSG00000276712 | |nearest_ensembl=ENSG00000276712 | ||
|nearest_promoter_id=NR_106961 | |nearest_promoter_id=NR_106961 | ||
|nearest_refseq=NR_106961 | |nearest_refseq=NR_106961 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=35470224 | |start=35470224 | ||
|start_of_center_position=13991094 | |start_of_center_position=13991094 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001163149 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_242192.1 | |tss_id=hg_242192.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=P50549 | ||
}} | }} | ||
Revision as of 16:10, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 13991094 |
|---|---|
| End of the center position in the TSS region: | 13991095 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001163149 |
|---|---|
| Distance: | -145 |
| Num_trans: | 12 |
| All_trans: | NM_001163149:-145 ENST00000403685.5:-154 X87175:-154 ENST00000431887.5:-289 ENST00000242066.9:-330 ENST00000421381.5:-330 NM_001163148:-330 NM_001370555:389 NR_120445:393 ENST00000443137.5:405 BC045776:405 AK294755:458 |
TATA-Box annotation
| Distance to TSS: | -275 |
|---|---|
| Nearest PromoterID: | NR_106961 |
| Entrez ID: | 102465668 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_106961 |
| Nearest Ensembl: | ENSG00000276712 |
| Gene Name: | ETS variant transcription factor 1 |
| Gene Alias: | hsa-mir-7111 |
| Gene Description: | microRNA 7111 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
