Difference between revisions of "TSS:Hg 242723.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=AY363099:-1 ENST00000381869.5:-41 ENST00000523718.5:-41 NM_001001925:-41 NM_001001924:-41 AK310871:-41 FJ458441:-131 ENST00000262102.10:208 BC136320:208 BC171765:208 NM_001363057:-218 NM_001363060:-218 NM_001363059:-348 NM_001363058:-348 NM_001363062:-348 NR_156437:-348 FJ458440:-353 LF213941:-362 MA449518:-362 LF208094:-363 MA443671:-363 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance= | + | |distance=-1 |
| − | |distance_to_tss= | + | |distance_to_tss=115 |
|end=5513694 | |end=5513694 | ||
|end_of_center_position=17800876 | |end_of_center_position=17800876 | ||
| Line 11: | Line 11: | ||
|gene_alias=Fbl18 | |gene_alias=Fbl18 | ||
|gene_description=F-box and leucine rich repeat protein 18 | |gene_description=F-box and leucine rich repeat protein 18 | ||
| − | |gene_id= | + | |gene_id=57509 |
| − | |gene_name= | + | |gene_name=microtubule associated scaffold protein 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:29789 |
| − | |gene_symbol= | + | |gene_symbol=MTUS1 |
| − | |gene_synonyms= | + | |gene_synonyms=ATBP ATIP1 ATIP3 DKFZp586D1519 FLJ14295 ICIS KIAA1288 MP44 MTSG1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:29789 |
|nearest_ensembl=ENSG00000155034 | |nearest_ensembl=ENSG00000155034 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001321213 |
|nearest_refseq=NM_024963 | |nearest_refseq=NM_024963 | ||
|nearest_unigene=Hs.623974 | |nearest_unigene=Hs.623974 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=5513693 | |start=5513693 | ||
|start_of_center_position=17800875 | |start_of_center_position=17800875 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AY363099 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_242723.1 | |tss_id=hg_242723.1 | ||
Revision as of 16:22, 17 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 17800875 |
|---|---|
| End of the center position in the TSS region: | 17800876 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AY363099 |
|---|---|
| Distance: | -1 |
| Num_trans: | 21 |
| All_trans: | AY363099:-1 ENST00000381869.5:-41 ENST00000523718.5:-41 NM_001001925:-41 NM_001001924:-41 AK310871:-41 FJ458441:-131 ENST00000262102.10:208 BC136320:208 BC171765:208 NM_001363057:-218 NM_001363060:-218 NM_001363059:-348 NM_001363058:-348 NM_001363062:-348 NR_156437:-348 FJ458440:-353 LF213941:-362 MA449518:-362 LF208094:-363 MA443671:-363 |
TATA-Box annotation
| Distance to TSS: | 115 |
|---|---|
| Nearest PromoterID: | NM_001321213 |
| Entrez ID: | 80028 |
| Nearest Unigene: | Hs.623974 |
| Nearest Refseq: | NM_024963 |
| Nearest Ensembl: | ENSG00000155034 |
| Gene Name: | microtubule associated scaffold protein 1 |
| Gene Alias: | Fbl18 |
| Gene Description: | F-box and leucine rich repeat protein 18 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
