Difference between revisions of "TSS:Hg 243535.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|NELF= | |NELF= | ||
| − | |all_trans= | + | |all_trans=DQ596276:71 AB462505:-219 DQ598641:299 AB026838:299 LX251243:299 LZ235584:299 S55822:299 ENST00000361390.2:376 LP790444:376 AK074482:376 LP790447:376 LP790441:376 BC017294:390 BC061915:391 BC009316:-397 AF216862:417 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=71 |
|distance_to_tss=-28161 | |distance_to_tss=-28161 | ||
|end=137487495 | |end=137487495 | ||
| Line 10: | Line 10: | ||
|entrez_id=26012 | |entrez_id=26012 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=HH9 | + | |gene_alias=HH9{{!}}NELF |
|gene_description=NMDA receptor synaptonuclear signaling and neuronal migration factor | |gene_description=NMDA receptor synaptonuclear signaling and neuronal migration factor | ||
|gene_id=375775 | |gene_id=375775 | ||
| − | |gene_name= | + | |gene_name=NSMF |
|gene_source=HGNC:24768 | |gene_source=HGNC:24768 | ||
|gene_symbol=PNPLA7 | |gene_symbol=PNPLA7 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_015537 | |nearest_refseq=NM_015537 | ||
|nearest_unigene=Hs.455336 | |nearest_unigene=Hs.455336 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=137487494 | |start=137487494 | ||
|start_of_center_position=2930 | |start_of_center_position=2930 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=29(CCTTTACTGGGG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=DQ596276 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243535.1 | |tss_id=hg_243535.1 | ||
Revision as of 16:41, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 2930 |
|---|---|
| End of the center position in the TSS region: | 2931 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | DQ596276 |
|---|---|
| Distance: | 71 |
| Num_trans: | 16 |
| All_trans: | DQ596276:71 AB462505:-219 DQ598641:299 AB026838:299 LX251243:299 LZ235584:299 S55822:299 ENST00000361390.2:376 LP790444:376 AK074482:376 LP790447:376 LP790441:376 BC017294:390 BC061915:391 BC009316:-397 AF216862:417 |
TATA-Box annotation
| Distance to TSS: | -28161 |
|---|---|
| Nearest PromoterID: | NM_001130969 |
| Entrez ID: | 26012 |
| Nearest Unigene: | Hs.455336 |
| Nearest Refseq: | NM_015537 |
| Nearest Ensembl: | ENSG00000165802 |
| Gene Name: | NSMF |
| Gene Alias: | HH9|NELF |
| Gene Description: | NMDA receptor synaptonuclear signaling and neuronal migration factor |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 29(CCTTTACTGGGG,+,0.00) |
