Difference between revisions of "TSS:Hg 243803.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000431025.1:85 ENST00000437981.5:86 ENST00000596412.6:89 U66044:89 U66045:89 ENST00000441880.1:177 AF179280:177 ENST00000427113.2:203 ENST00000412882.5:230 AF179281:257 |
|chr=chrM | |chr=chrM | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=85 |
| − | |distance_to_tss= | + | |distance_to_tss=-7547 |
|end=15063 | |end=15063 | ||
|end_of_center_position=149533171 | |end_of_center_position=149533171 | ||
| − | |entrez_id= | + | |entrez_id=113219467 |
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=microRNA 12136 |
| − | |gene_name= | + | |gene_id=100131434 |
| − | |gene_type= | + | |gene_name=long intergenic non-protein coding RNA 893 |
| + | |gene_source=HGNC:44265 | ||
| + | |gene_symbol=LINC00893 | ||
| + | |gene_synonyms= | ||
| + | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:44265 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_162149 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_162149 |
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=15058 | |start=15058 | ||
|start_of_center_position=149533170 | |start_of_center_position=149533170 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000431025.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243803.1 | |tss_id=hg_243803.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:47, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 149533170 |
|---|---|
| End of the center position in the TSS region: | 149533171 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000431025.1 |
|---|---|
| Distance: | 85 |
| Num_trans: | 10 |
| All_trans: | ENST00000431025.1:85 ENST00000437981.5:86 ENST00000596412.6:89 U66044:89 U66045:89 ENST00000441880.1:177 AF179280:177 ENST00000427113.2:203 ENST00000412882.5:230 AF179281:257 |
TATA-Box annotation
| Distance to TSS: | -7547 |
|---|---|
| Nearest PromoterID: | NR_162149 |
| Entrez ID: | 113219467 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_162149 |
| Nearest Ensembl: | |
| Gene Name: | long intergenic non-protein coding RNA 893 |
| Gene Alias: | - |
| Gene Description: | microRNA 12136 |
| Gene Type: | ncRNA |
| CpG%: | 0.045 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
