Difference between revisions of "TSS:Hg 28520.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000596663.5:0 | + | |all_trans=ENST00000596663.5:0 ENST00000659091.1:0 ENST00000447423.3:0 AK096196:0 AK295617:0 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl=ENSG00000055813 | |nearest_ensembl=ENSG00000055813 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001348514 |
|nearest_refseq=NM_001080433 | |nearest_refseq=NM_001080433 | ||
|nearest_unigene=Hs.117136 | |nearest_unigene=Hs.117136 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=56184906 | |start=56184906 | ||
|start_of_center_position=56184915 | |start_of_center_position=56184915 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000596663.5 | + | |transcript_name=ENST00000596663.5 ENST00000659091.1 ENST00000447423.3 AK096196 AK295617 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_28520.1 | |tss_id=hg_28520.1 | ||
Revision as of 18:37, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 56184915 |
|---|---|
| End of the center position in the TSS region: | 56184916 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000596663.5 ENST00000659091.1 ENST00000447423.3 AK096196 AK295617 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENST00000596663.5:0 ENST00000659091.1:0 ENST00000447423.3:0 AK096196:0 AK295617:0 |
TATA-Box annotation
| Distance to TSS: | 792 |
|---|---|
| Nearest PromoterID: | NM_001348514 |
| Entrez ID: | 114800 |
| Nearest Unigene: | Hs.117136 |
| Nearest Refseq: | NM_001080433 |
| Nearest Ensembl: | ENSG00000055813 |
| Gene Name: | uncharacterized LOC100129434 |
| Gene Alias: | - |
| Gene Description: | coiled-coil domain containing 85A |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
