Difference between revisions of "TSS:Hg 3210.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000371077.9:0 ENST00000611228.4:0 | + | |all_trans=ENST00000371077.9:0 ENST00000611228.4:0 NR_158768:0 NM_001366232:0 NM_001366235:0 NM_001366234:0 NM_001366233:0 NM_152489:0 NR_158769:0 ENST00000371076.7:170 HM005529:170 BC029895:170 CU688784:413 DQ891312:413 DQ894496:413 KJ895622:413 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=1 |
|end=64203637 | |end=64203637 | ||
|end_of_center_position=64203625 | |end_of_center_position=64203625 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description=ubiquitin conjugating enzyme E2 U | + | |gene_description=ubiquitin conjugating enzyme E2 U |
|gene_id=148581 | |gene_id=148581 | ||
| − | |gene_name=ubiquitin conjugating enzyme E2 U | + | |gene_name=ubiquitin conjugating enzyme E2 U |
|gene_source=HGNC:28559 | |gene_source=HGNC:28559 | ||
|gene_symbol=UBE2U | |gene_symbol=UBE2U | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_152489 | |nearest_refseq=NM_152489 | ||
|nearest_unigene=Hs.388746 | |nearest_unigene=Hs.388746 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=64203611 | |start=64203611 | ||
|start_of_center_position=64203624 | |start_of_center_position=64203624 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000371077.9 ENST00000611228.4 | + | |transcript_name=ENST00000371077.9 ENST00000611228.4 NR_158768 NM_001366232 NM_001366235 NM_001366234 NM_001366233 NM_152489 NR_158769 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_3210.1 | |tss_id=hg_3210.1 | ||
Revision as of 19:58, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 64203624 |
|---|---|
| End of the center position in the TSS region: | 64203625 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000371077.9 ENST00000611228.4 NR_158768 NM_001366232 NM_001366235 NM_001366234 NM_001366233 NM_152489 NR_158769 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENST00000371077.9:0 ENST00000611228.4:0 NR_158768:0 NM_001366232:0 NM_001366235:0 NM_001366234:0 NM_001366233:0 NM_152489:0 NR_158769:0 ENST00000371076.7:170 HM005529:170 BC029895:170 CU688784:413 DQ891312:413 DQ894496:413 KJ895622:413 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_152489 |
| Entrez ID: | 148581 |
| Nearest Unigene: | Hs.388746 |
| Nearest Refseq: | NM_152489 |
| Nearest Ensembl: | ENSG00000177414 |
| Gene Name: | ubiquitin conjugating enzyme E2 U |
| Gene Alias: | - |
| Gene Description: | ubiquitin conjugating enzyme E2 U |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
