Difference between revisions of "TSS:Hg 3726.1"
From referenceTSS
| Line 4: | Line 4: | ||
|LPHH1= | |LPHH1= | ||
|LPHN2= | |LPHN2= | ||
| − | |all_trans=ENST00000370715.5:-194 ENST00000370713.5:-194 ENST00000319517.10:-194 ENST00000627151.2:-194 ENST00000370717.6:-194 NM_012302:-194 | + | |all_trans=ENST00000674367.1:-161 ENST00000674410.1:-161 ENST00000674373.1:-161 ENST00000674492.1:-161 ENST00000370715.5:-194 ENST00000370713.5:-194 ENST00000319517.10:-194 ENST00000627151.2:-194 ENST00000370717.6:-194 NM_001297706:-194 NM_001330645:-194 NM_001297705:-194 NM_012302:-194 AF104266:-194 AF104938:-194 AF104939:-194 ENST00000674407.1:-213 ENST00000674168.1:-213 ENST00000674307.1:-213 ENST00000674209.1:-213 ENST00000674489.1:-215 ENST00000674442.1:-215 ENST00000674419.1:-215 NM_001366005:-215 NM_001350699:-215 NM_001366006:309 NM_001350698:309 NM_001366002:309 NM_001366009:309 ENST00000674333.1:342 ENST00000674393.1:362 ENST00000674208.1:373 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance=- | + | |distance=-161 |
|distance_to_tss=211 | |distance_to_tss=211 | ||
|end=81800625 | |end=81800625 | ||
| Line 13: | Line 13: | ||
|entrez_id=23266 | |entrez_id=23266 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=CIRL2 | + | |gene_alias=CIRL2{{!}}CL2{{!}}LEC1{{!}}LPHH1{{!}}LPHN2 |
|gene_description=adhesion G protein-coupled receptor L2 | |gene_description=adhesion G protein-coupled receptor L2 | ||
|gene_id=23266 | |gene_id=23266 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:18582 | |hgnc_mgi_id=HGNC:18582 | ||
|nearest_ensembl=ENSG00000117114 | |nearest_ensembl=ENSG00000117114 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001297705 |
|nearest_refseq=NM_012302 | |nearest_refseq=NM_012302 | ||
|nearest_unigene=Hs.24212 | |nearest_unigene=Hs.24212 | ||
| − | |num_trans= | + | |num_trans=32 |
|species=human | |species=human | ||
|start=81800590 | |start=81800590 | ||
|start_of_center_position=81800607 | |start_of_center_position=81800607 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=81(GTTTTTAAAGTG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000674367.1 ENST00000674410.1 ENST00000674373.1 ENST00000674492.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_3726.1 | |tss_id=hg_3726.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A6I8PU30 |
}} | }} | ||
Revision as of 21:57, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 81800607 |
|---|---|
| End of the center position in the TSS region: | 81800608 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000674367.1 ENST00000674410.1 ENST00000674373.1 ENST00000674492.1 |
|---|---|
| Distance: | -161 |
| Num_trans: | 32 |
| All_trans: | ENST00000674367.1:-161 ENST00000674410.1:-161 ENST00000674373.1:-161 ENST00000674492.1:-161 ENST00000370715.5:-194 ENST00000370713.5:-194 ENST00000319517.10:-194 ENST00000627151.2:-194 ENST00000370717.6:-194 NM_001297706:-194 NM_001330645:-194 NM_001297705:-194 NM_012302:-194 AF104266:-194 AF104938:-194 AF104939:-194 ENST00000674407.1:-213 ENST00000674168.1:-213 ENST00000674307.1:-213 ENST00000674209.1:-213 ENST00000674489.1:-215 ENST00000674442.1:-215 ENST00000674419.1:-215 NM_001366005:-215 NM_001350699:-215 NM_001366006:309 NM_001350698:309 NM_001366002:309 NM_001366009:309 ENST00000674333.1:342 ENST00000674393.1:362 ENST00000674208.1:373 |
TATA-Box annotation
| Distance to TSS: | 211 |
|---|---|
| Nearest PromoterID: | NM_001297705 |
| Entrez ID: | 23266 |
| Nearest Unigene: | Hs.24212 |
| Nearest Refseq: | NM_012302 |
| Nearest Ensembl: | ENSG00000117114 |
| Gene Name: | adhesion G protein-coupled receptor L2 |
| Gene Alias: | CIRL2|CL2|LEC1|LPHH1|LPHN2 |
| Gene Description: | adhesion G protein-coupled receptor L2 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 81(GTTTTTAAAGTG,+,0.00) |
