Difference between revisions of "TSS:Hg 46501.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PDEB= | |PDEB= | ||
|RP40= | |RP40= | ||
| − | |all_trans= | + | |all_trans=S41458:0 EU176360:4 DQ895767:4 X66142:4 CU674100:8 KJ897313:8 KR709770:8 KR709771:8 BT009794:9 ENST00000255622.10:-14 BC000249:-14 ENST00000496514.6:-25 NM_000283:-25 NM_001145291:-25 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| Line 12: | Line 12: | ||
|entrez_id=5158 | |entrez_id=5158 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
| − | |gene_alias=CSNB3 | + | |gene_alias=CSNB3{{!}}CSNBAD2{{!}}GMP-PDEbeta{{!}}PDEB{{!}}RP40{{!}}rd1 |
|gene_description=phosphodiesterase 6B | |gene_description=phosphodiesterase 6B | ||
|gene_id=5158 | |gene_id=5158 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_000283 | |nearest_refseq=NM_000283 | ||
|nearest_unigene=Hs.623810 | |nearest_unigene=Hs.623810 | ||
| − | |num_trans= | + | |num_trans=14 |
|rd1= | |rd1= | ||
|species=human | |species=human | ||
| Line 31: | Line 31: | ||
|start_of_center_position=625607 | |start_of_center_position=625607 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=S41458 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_46501.1 | |tss_id=hg_46501.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 01:30, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 625607 |
|---|---|
| End of the center position in the TSS region: | 625608 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | S41458 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | S41458:0 EU176360:4 DQ895767:4 X66142:4 CU674100:8 KJ897313:8 KR709770:8 KR709771:8 BT009794:9 ENST00000255622.10:-14 BC000249:-14 ENST00000496514.6:-25 NM_000283:-25 NM_001145291:-25 |
TATA-Box annotation
| Distance to TSS: | 34 |
|---|---|
| Nearest PromoterID: | NM_001145291 |
| Entrez ID: | 5158 |
| Nearest Unigene: | Hs.623810 |
| Nearest Refseq: | NM_000283 |
| Nearest Ensembl: | ENSG00000133256 |
| Gene Name: | phosphodiesterase 6B |
| Gene Alias: | CSNB3|CSNBAD2|GMP-PDEbeta|PDEB|RP40|rd1 |
| Gene Description: | phosphodiesterase 6B |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
