Difference between revisions of "TSS:Hg 49568.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BC063856:0 ENST00000394339.2 | + | |all_trans=NM_005841:0 BC063856:0 ENST00000394339.2:-18 AK026960:-18 ENST00000508849.1:421 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-3 |
|end=123399547 | |end=123399547 | ||
|end_of_center_position=123399538 | |end_of_center_position=123399538 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_005841 | |nearest_refseq=NM_005841 | ||
|nearest_unigene=Hs.744854 | |nearest_unigene=Hs.744854 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=123399527 | |start=123399527 | ||
|start_of_center_position=123399537 | |start_of_center_position=123399537 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=80(TTCCTTTAAAGC,-,0.00),81(TCCTTTAAAGCA,+,0.00) |
| − | |transcript_name=BC063856 | + | |transcript_name=NM_005841 BC063856 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_49568.1 | |tss_id=hg_49568.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=O43609 |
}} | }} | ||
Revision as of 02:42, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 123399537 |
|---|---|
| End of the center position in the TSS region: | 123399538 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_005841 BC063856 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | NM_005841:0 BC063856:0 ENST00000394339.2:-18 AK026960:-18 ENST00000508849.1:421 |
TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NM_005841 |
| Entrez ID: | 10252 |
| Nearest Unigene: | Hs.744854 |
| Nearest Refseq: | NM_005841 |
| Nearest Ensembl: | ENSG00000164056 |
| Gene Name: | sprouty RTK signaling antagonist 1 |
| Gene Alias: | hSPRY1 |
| Gene Description: | sprouty RTK signaling antagonist 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 80(TTCCTTTAAAGC,-,0.00),81(TCCTTTAAAGCA,+,0.00) |
