Difference between revisions of "TSS:Hg 49896.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|DOC1= | |DOC1= | ||
| − | |all_trans=ENST00000502586.5:0 ENST00000502803.5:0 ENST00000507193.5:0 | + | |all_trans=ENST00000502586.5:0 ENST00000502803.5:0 ENST00000507193.5:0 ENST00000296577.9:0 ENST00000506506.5:0 NM_001040876:0 NM_002940:0 AK315198:0 AB062293:0 X76388:0 BC016283:0 LF208162:-48 MA443739:-48 LF373114:386 MA608691:386 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-5 |
|end=145098343 | |end=145098343 | ||
|end_of_center_position=145098307 | |end_of_center_position=145098307 | ||
| − | |entrez_id= | + | |entrez_id=6059 |
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias= | + | |gene_alias=ABC38{{!}}OABP{{!}}RLI{{!}}RLI1{{!}}RNASEL1{{!}}RNASELI{{!}}RNS4I |
| − | |gene_description= | + | |gene_description=ATP binding cassette subfamily E member 1 |
|gene_id=6059 | |gene_id=6059 | ||
|gene_name=ATP binding cassette subfamily E member 1 | |gene_name=ATP binding cassette subfamily E member 1 | ||
|gene_source=HGNC:69 | |gene_source=HGNC:69 | ||
|gene_symbol=ABCE1 | |gene_symbol=ABCE1 | ||
| − | |gene_synonyms=OABP RLI | + | |gene_synonyms=OABP RLI RLI1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:69 | |hgnc_mgi_id=HGNC:69 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000164163 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001040876 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_002940 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.12013 |
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=145098269 | |start=145098269 | ||
|start_of_center_position=145098306 | |start_of_center_position=145098306 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000502586.5 ENST00000502803.5 ENST00000507193.5 ENST00000506506.5 | + | |transcript_name=ENST00000502586.5 ENST00000502803.5 ENST00000507193.5 ENST00000296577.9 ENST00000506506.5 NM_001040876 NM_002940 AK315198 AB062293 X76388 BC016283 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_49896.1 | |tss_id=hg_49896.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=D6R9I9 D6RGF4 | + | |uniprot_id=D6R9I9 D6RGF4 P61221 |
}} | }} | ||
Revision as of 02:49, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 145098306 |
|---|---|
| End of the center position in the TSS region: | 145098307 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000502586.5 ENST00000502803.5 ENST00000507193.5 ENST00000296577.9 ENST00000506506.5 NM_001040876 NM_002940 AK315198 AB062293 X76388 BC016283 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENST00000502586.5:0 ENST00000502803.5:0 ENST00000507193.5:0 ENST00000296577.9:0 ENST00000506506.5:0 NM_001040876:0 NM_002940:0 AK315198:0 AB062293:0 X76388:0 BC016283:0 LF208162:-48 MA443739:-48 LF373114:386 MA608691:386 |
TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_001040876 |
| Entrez ID: | 6059 |
| Nearest Unigene: | Hs.12013 |
| Nearest Refseq: | NM_002940 |
| Nearest Ensembl: | ENSG00000164163 |
| Gene Name: | ATP binding cassette subfamily E member 1 |
| Gene Alias: | ABC38|OABP|RLI|RLI1|RNASEL1|RNASELI|RNS4I |
| Gene Description: | ATP binding cassette subfamily E member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
