Difference between revisions of "TSS:Hg 5201.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=BC027033:0 ENST00000462520.5:-17 ENST00000368918.8:127 NM_001323907:127 NM_001323910:127 NM_001323909:127 NM_001323913:127 NM_001323912:127 NM_001323908:127 NM_001323906:127 NM_001323911:127 NM_144618:127 AK092230:130 ENST00000489549.5:143 AK313606:165 ENST00000486076.5:170 AK301882:180 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-147 |
|end=151070634 | |end=151070634 | ||
|end_of_center_position=151070615 | |end_of_center_position=151070615 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
|gene_alias=GABPB-2 | |gene_alias=GABPB-2 | ||
| − | |gene_description=GA binding protein transcription factor beta | + | |gene_description=GA binding protein transcription factor subunit beta 2 |
|gene_id=126626 | |gene_id=126626 | ||
| − | |gene_name=GA binding protein transcription factor beta | + | |gene_name=GA binding protein transcription factor subunit beta 2 |
|gene_source=HGNC:28441 | |gene_source=HGNC:28441 | ||
|gene_symbol=GABPB2 | |gene_symbol=GABPB2 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_144618 | |nearest_refseq=NM_144618 | ||
|nearest_unigene=Hs.15671 | |nearest_unigene=Hs.15671 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=151070594 | |start=151070594 | ||
|start_of_center_position=151070614 | |start_of_center_position=151070614 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC027033 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_5201.1 | |tss_id=hg_5201.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 03:38, 18 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 151070614 |
|---|---|
| End of the center position in the TSS region: | 151070615 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC027033 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | BC027033:0 ENST00000462520.5:-17 ENST00000368918.8:127 NM_001323907:127 NM_001323910:127 NM_001323909:127 NM_001323913:127 NM_001323912:127 NM_001323908:127 NM_001323906:127 NM_001323911:127 NM_144618:127 AK092230:130 ENST00000489549.5:143 AK313606:165 ENST00000486076.5:170 AK301882:180 |
TATA-Box annotation
| Distance to TSS: | -147 |
|---|---|
| Nearest PromoterID: | NM_144618 |
| Entrez ID: | 126626 |
| Nearest Unigene: | Hs.15671 |
| Nearest Refseq: | NM_144618 |
| Nearest Ensembl: | ENSG00000143458 |
| Gene Name: | GA binding protein transcription factor subunit beta 2 |
| Gene Alias: | GABPB-2 |
| Gene Description: | GA binding protein transcription factor subunit beta 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
