Difference between revisions of "TSS:Hg 52013.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000507460.1 | + | |all_trans=NM_001114175:48 NM_001330690:48 NM_001377147:48 NM_001377153:48 NM_001377150:48 NM_001377149:48 NM_001377148:48 ENST00000507460.1:-71 AK307128:-71 ENST00000506961.5:75 ENST00000514090.5:76 ENST00000356504.5:78 AK125179:78 ENST00000503806.5:94 AB209295:-276 ENST00000630416.2:-309 ENST00000514193.5:-309 AK293466:-309 AK289662:420 NM_001377151:422 S62907:-449 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance= | + | |distance=48 |
|distance_to_tss=82 | |distance_to_tss=82 | ||
|end=46389479 | |end=46389479 | ||
| Line 12: | Line 12: | ||
|gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | |gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | ||
|gene_id=2555 | |gene_id=2555 | ||
| − | |gene_name=gamma-aminobutyric acid type A receptor alpha2 | + | |gene_name=gamma-aminobutyric acid type A receptor subunit alpha2 |
|gene_source=HGNC:4076 | |gene_source=HGNC:4076 | ||
|gene_symbol=GABRA2 | |gene_symbol=GABRA2 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_000807 | |nearest_refseq=NM_000807 | ||
|nearest_unigene=Hs.48372 | |nearest_unigene=Hs.48372 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=46389456 | |start=46389456 | ||
|start_of_center_position=46389467 | |start_of_center_position=46389467 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-28(TCTTTTATAGTC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=NM_001114175 NM_001330690 NM_001377147 NM_001377153 NM_001377150 NM_001377149 NM_001377148 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_52013.1 | |tss_id=hg_52013.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P47869 |
}} | }} | ||
Revision as of 03:39, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 46389467 |
|---|---|
| End of the center position in the TSS region: | 46389468 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001114175 NM_001330690 NM_001377147 NM_001377153 NM_001377150 NM_001377149 NM_001377148 |
|---|---|
| Distance: | 48 |
| Num_trans: | 21 |
| All_trans: | NM_001114175:48 NM_001330690:48 NM_001377147:48 NM_001377153:48 NM_001377150:48 NM_001377149:48 NM_001377148:48 ENST00000507460.1:-71 AK307128:-71 ENST00000506961.5:75 ENST00000514090.5:76 ENST00000356504.5:78 AK125179:78 ENST00000503806.5:94 AB209295:-276 ENST00000630416.2:-309 ENST00000514193.5:-309 AK293466:-309 AK289662:420 NM_001377151:422 S62907:-449 |
TATA-Box annotation
| Distance to TSS: | 82 |
|---|---|
| Nearest PromoterID: | NM_001330690 |
| Entrez ID: | 2555 |
| Nearest Unigene: | Hs.48372 |
| Nearest Refseq: | NM_000807 |
| Nearest Ensembl: | ENSG00000151834 |
| Gene Name: | gamma-aminobutyric acid type A receptor subunit alpha2 |
| Gene Alias: | - |
| Gene Description: | gamma-aminobutyric acid type A receptor alpha2 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -28(TCTTTTATAGTC,+,0.00) |
