Difference between revisions of "TSS:Hg 52014.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000507460.1:3 | + | |all_trans=ENST00000507460.1:3 AK307128:3 NM_001114175:144 NM_001330690:144 NM_001377147:144 NM_001377153:144 NM_001377150:144 NM_001377149:144 NM_001377148:144 ENST00000506961.5:171 ENST00000514090.5:172 ENST00000356504.5:174 AK125179:174 ENST00000503806.5:190 AB209295:-192 ENST00000630416.2:-225 ENST00000514193.5:-225 AK293466:-225 S62907:-365 ENST00000540012.5:-476 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| Line 12: | Line 12: | ||
|gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | |gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | ||
|gene_id=2555 | |gene_id=2555 | ||
| − | |gene_name=gamma-aminobutyric acid type A receptor alpha2 | + | |gene_name=gamma-aminobutyric acid type A receptor subunit alpha2 |
|gene_source=HGNC:4076 | |gene_source=HGNC:4076 | ||
|gene_symbol=GABRA2 | |gene_symbol=GABRA2 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_000807 | |nearest_refseq=NM_000807 | ||
|nearest_unigene=Hs.48372 | |nearest_unigene=Hs.48372 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=46389552 | |start=46389552 | ||
|start_of_center_position=46389557 | |start_of_center_position=46389557 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=62(TCTTTTATAGTC,+,0.00) |
| − | |transcript_name=ENST00000507460.1 | + | |transcript_name=ENST00000507460.1 AK307128 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_52014.1 | |tss_id=hg_52014.1 | ||
Revision as of 03:39, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 46389557 |
|---|---|
| End of the center position in the TSS region: | 46389558 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000507460.1 AK307128 |
|---|---|
| Distance: | 3 |
| Num_trans: | 20 |
| All_trans: | ENST00000507460.1:3 AK307128:3 NM_001114175:144 NM_001330690:144 NM_001377147:144 NM_001377153:144 NM_001377150:144 NM_001377149:144 NM_001377148:144 ENST00000506961.5:171 ENST00000514090.5:172 ENST00000356504.5:174 AK125179:174 ENST00000503806.5:190 AB209295:-192 ENST00000630416.2:-225 ENST00000514193.5:-225 AK293466:-225 S62907:-365 ENST00000540012.5:-476 |
TATA-Box annotation
| Distance to TSS: | -8 |
|---|---|
| Nearest PromoterID: | NM_001330690 |
| Entrez ID: | 2555 |
| Nearest Unigene: | Hs.48372 |
| Nearest Refseq: | NM_000807 |
| Nearest Ensembl: | ENSG00000151834 |
| Gene Name: | gamma-aminobutyric acid type A receptor subunit alpha2 |
| Gene Alias: | - |
| Gene Description: | gamma-aminobutyric acid type A receptor alpha2 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 62(TCTTTTATAGTC,+,0.00) |
