Difference between revisions of "TSS:Hg 52015.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
− | |all_trans= | + | |all_trans=S62907:-21 ENST00000630416.2:104 ENST00000514193.5:104 AK293466:104 ENST00000540012.5:-132 AB209295:137 ENST00000381620.9:-221 NM_000807:-221 NM_001377152:-221 NM_001377144:-221 NM_001286827:-221 ENST00000507460.1:342 AK307128:342 NM_001377154:-393 NM_001377146:-393 NM_001377145:-393 NM_001377155:-393 NM_001114175:483 NM_001330690:483 NM_001377147:483 NM_001377153:483 NM_001377150:483 NM_001377149:483 NM_001377148:483 ENST00000515082.5:-497 BC022488:-497 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
|distance=-21 | |distance=-21 | ||
− | |distance_to_tss= | + | |distance_to_tss=229 |
|end=46389907 | |end=46389907 | ||
|end_of_center_position=46389900 | |end_of_center_position=46389900 | ||
Line 12: | Line 12: | ||
|gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | |gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | ||
|gene_id=2555 | |gene_id=2555 | ||
− | |gene_name=gamma-aminobutyric acid type A receptor alpha2 | + | |gene_name=gamma-aminobutyric acid type A receptor subunit alpha2 |
|gene_source=HGNC:4076 | |gene_source=HGNC:4076 | ||
|gene_symbol=GABRA2 | |gene_symbol=GABRA2 | ||
Line 22: | Line 22: | ||
|nearest_refseq=NM_000807 | |nearest_refseq=NM_000807 | ||
|nearest_unigene=Hs.48372 | |nearest_unigene=Hs.48372 | ||
− | |num_trans= | + | |num_trans=26 |
|species=human | |species=human | ||
|start=46389891 | |start=46389891 | ||
|start_of_center_position=46389899 | |start_of_center_position=46389899 | ||
|strand=- | |strand=- | ||
− | |transcript_name= | + | |transcript_name=S62907 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_52015.1 | |tss_id=hg_52015.1 | ||
|tss_score=1 | |tss_score=1 | ||
− | |uniprot_id= | + | |uniprot_id= |
}} | }} |
Revision as of 03:39, 18 June 2021
Basic information about the TSS
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Start of the center position in the TSS region: | 46389899 |
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End of the center position in the TSS region: | 46389900 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | S62907 |
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Distance: | -21 |
Num_trans: | 26 |
All_trans: | S62907:-21 ENST00000630416.2:104 ENST00000514193.5:104 AK293466:104 ENST00000540012.5:-132 AB209295:137 ENST00000381620.9:-221 NM_000807:-221 NM_001377152:-221 NM_001377144:-221 NM_001286827:-221 ENST00000507460.1:342 AK307128:342 NM_001377154:-393 NM_001377146:-393 NM_001377145:-393 NM_001377155:-393 NM_001114175:483 NM_001330690:483 NM_001377147:483 NM_001377153:483 NM_001377150:483 NM_001377149:483 NM_001377148:483 ENST00000515082.5:-497 BC022488:-497 |
TATA-Box annotation
Distance to TSS: | 229 |
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Nearest PromoterID: | NM_001286827 |
Entrez ID: | 2555 |
Nearest Unigene: | Hs.48372 |
Nearest Refseq: | NM_000807 |
Nearest Ensembl: | ENSG00000151834 |
Gene Name: | gamma-aminobutyric acid type A receptor subunit alpha2 |
Gene Alias: | - |
Gene Description: | gamma-aminobutyric acid type A receptor alpha2 subunit |
Gene Type: | protein-coding |
CpG%: | 0.08 |
GC%: | 0.626866 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |