Personal tools

Difference between revisions of "TSS:Hg 52015.1"

From referenceTSS

Jump to: navigation, search
Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
|all_trans=ENST00000381620.8:-21 uc010igc.4:-21 S62907:-21 ENST00000630416.2:104 ENST00000514193.5:104 uc062wil.1:104 uc062wir.1:104 AK293466:104 ENST00000540012.5:-132 NM_000807:-132 NM_001286827:-132 uc062wim.1:-132 AB209295:137 ENST00000507460.1:342 uc010igd.2:342 AK307128:342 ENST00000515082.5:-497 uc003gxe.3:-497 BC022488:-497
+
|all_trans=S62907:-21 ENST00000630416.2:104 ENST00000514193.5:104 AK293466:104 ENST00000540012.5:-132 AB209295:137 ENST00000381620.9:-221 NM_000807:-221 NM_001377152:-221 NM_001377144:-221 NM_001286827:-221 ENST00000507460.1:342 AK307128:342 NM_001377154:-393 NM_001377146:-393 NM_001377145:-393 NM_001377155:-393 NM_001114175:483 NM_001330690:483 NM_001377147:483 NM_001377153:483 NM_001377150:483 NM_001377149:483 NM_001377148:483 ENST00000515082.5:-497 BC022488:-497
 
|chr=chr4
 
|chr=chr4
 
|cpg_percent=0.08
 
|cpg_percent=0.08
 
|distance=-21
 
|distance=-21
|distance_to_tss=169
+
|distance_to_tss=229
 
|end=46389907
 
|end=46389907
 
|end_of_center_position=46389900
 
|end_of_center_position=46389900
Line 12: Line 12:
 
|gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit
 
|gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit
 
|gene_id=2555
 
|gene_id=2555
|gene_name=gamma-aminobutyric acid type A receptor alpha2 subunit
+
|gene_name=gamma-aminobutyric acid type A receptor subunit alpha2
 
|gene_source=HGNC:4076
 
|gene_source=HGNC:4076
 
|gene_symbol=GABRA2
 
|gene_symbol=GABRA2
Line 22: Line 22:
 
|nearest_refseq=NM_000807
 
|nearest_refseq=NM_000807
 
|nearest_unigene=Hs.48372
 
|nearest_unigene=Hs.48372
|num_trans=19
+
|num_trans=26
 
|species=human
 
|species=human
 
|start=46389891
 
|start=46389891
 
|start_of_center_position=46389899
 
|start_of_center_position=46389899
 
|strand=-
 
|strand=-
|transcript_name=ENST00000381620.8 uc010igc.4 S62907
+
|transcript_name=S62907
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_52015.1
 
|tss_id=hg_52015.1
 
|tss_score=1
 
|tss_score=1
|uniprot_id=A0A024R9X6 P47869
+
|uniprot_id=
 
}}
 
}}

Revision as of 03:39, 18 June 2021

Basic information about the TSS


TSS ID:hg_52015.1
Species:human
Chr:chr4
TSS Classification:yes
Start:46389891
End:46389907
Strand:-
TSS Score:1
Start of the center position in the TSS region:46389899
End of the center position in the TSS region:46389900



Gene and protein annotation


Transcript_name:S62907
Distance:-21
GeneID:2555
HGNC/MGI_ID:HGNC:4076
UniProt_ID:
Gene_name:gamma-aminobutyric acid type A receptor subunit alpha2
Gene_symbol:GABRA2
Gene_synonyms:
Gene_source:HGNC:4076



Transcript annotation


Transcript_name:S62907
Distance:-21
Num_trans:26
All_trans:S62907:-21 ENST00000630416.2:104 ENST00000514193.5:104 AK293466:104 ENST00000540012.5:-132 AB209295:137 ENST00000381620.9:-221 NM_000807:-221 NM_001377152:-221 NM_001377144:-221 NM_001286827:-221 ENST00000507460.1:342 AK307128:342 NM_001377154:-393 NM_001377146:-393 NM_001377145:-393 NM_001377155:-393 NM_001114175:483 NM_001330690:483 NM_001377147:483 NM_001377153:483 NM_001377150:483 NM_001377149:483 NM_001377148:483 ENST00000515082.5:-497 BC022488:-497



TATA-Box annotation


Distance to TSS:229
Nearest PromoterID:NM_001286827
Entrez ID:2555
Nearest Unigene:Hs.48372
Nearest Refseq:NM_000807
Nearest Ensembl:ENSG00000151834
Gene Name:gamma-aminobutyric acid type A receptor subunit alpha2
Gene Alias:-
Gene Description:gamma-aminobutyric acid type A receptor alpha2 subunit
Gene Type:protein-coding
CpG%:0.08
GC%:0.626866
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):