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Difference between revisions of "TSS:Hg 52016.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=ENST00000381620.8:0 uc010igc.4:0 S62907:0 ENST00000540012.5:-108 NM_000807:-108 NM_001286827:-108 uc062wim.1:-108 ENST00000630416.2:127 ENST00000514193.5:127 uc062wil.1:127 uc062wir.1:127 AK293466:127 AB209295:160 ENST00000507460.1:365 uc010igd.2:365 AK307128:365 ENST00000515082.5:-473 uc003gxe.3:-473 BC022488:-473
+
|all_trans=S62907:0 ENST00000540012.5:-108 ENST00000630416.2:127 ENST00000514193.5:127 AK293466:127 AB209295:160 ENST00000381620.9:-197 NM_000807:-197 NM_001377152:-197 NM_001377144:-197 NM_001286827:-197 ENST00000507460.1:365 AK307128:365 NM_001377154:-369 NM_001377146:-369 NM_001377145:-369 NM_001377155:-369 ENST00000515082.5:-473 BC022488:-473
 
|chr=chr4
 
|chr=chr4
 
|cpg_percent=0.08
 
|cpg_percent=0.08
 
|distance=0
 
|distance=0
|distance_to_tss=145
+
|distance_to_tss=205
 
|end=46389931
 
|end=46389931
 
|end_of_center_position=46389923
 
|end_of_center_position=46389923
Line 12: Line 12:
 
|gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit
 
|gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit
 
|gene_id=2555
 
|gene_id=2555
|gene_name=gamma-aminobutyric acid type A receptor alpha2 subunit
+
|gene_name=gamma-aminobutyric acid type A receptor subunit alpha2
 
|gene_source=HGNC:4076
 
|gene_source=HGNC:4076
 
|gene_symbol=GABRA2
 
|gene_symbol=GABRA2
Line 27: Line 27:
 
|start_of_center_position=46389922
 
|start_of_center_position=46389922
 
|strand=-
 
|strand=-
|transcript_name=ENST00000381620.8 uc010igc.4 S62907
+
|transcript_name=S62907
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_52016.1
 
|tss_id=hg_52016.1
 
|tss_score=1
 
|tss_score=1
|uniprot_id=A0A024R9X6 P47869
+
|uniprot_id=
 
}}
 
}}

Revision as of 03:39, 18 June 2021

Basic information about the TSS


TSS ID:hg_52016.1
Species:human
Chr:chr4
TSS Classification:yes
Start:46389914
End:46389931
Strand:-
TSS Score:1
Start of the center position in the TSS region:46389922
End of the center position in the TSS region:46389923



Gene and protein annotation


Transcript_name:S62907
Distance:0
GeneID:2555
HGNC/MGI_ID:HGNC:4076
UniProt_ID:
Gene_name:gamma-aminobutyric acid type A receptor subunit alpha2
Gene_symbol:GABRA2
Gene_synonyms:
Gene_source:HGNC:4076



Transcript annotation


Transcript_name:S62907
Distance:0
Num_trans:19
All_trans:S62907:0 ENST00000540012.5:-108 ENST00000630416.2:127 ENST00000514193.5:127 AK293466:127 AB209295:160 ENST00000381620.9:-197 NM_000807:-197 NM_001377152:-197 NM_001377144:-197 NM_001286827:-197 ENST00000507460.1:365 AK307128:365 NM_001377154:-369 NM_001377146:-369 NM_001377145:-369 NM_001377155:-369 ENST00000515082.5:-473 BC022488:-473



TATA-Box annotation


Distance to TSS:205
Nearest PromoterID:NM_001286827
Entrez ID:2555
Nearest Unigene:Hs.48372
Nearest Refseq:NM_000807
Nearest Ensembl:ENSG00000151834
Gene Name:gamma-aminobutyric acid type A receptor subunit alpha2
Gene Alias:-
Gene Description:gamma-aminobutyric acid type A receptor alpha2 subunit
Gene Type:protein-coding
CpG%:0.08
GC%:0.636816
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):