Difference between revisions of "TSS:Hg 52019.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000381620.9:-33 NM_000807:-33 NM_001377152:-33 NM_001377144:-33 NM_001286827:-33 ENST00000540012.5:46 S62907:157 NM_001377154:-205 NM_001377146:-205 NM_001377145:-205 NM_001377155:-205 ENST00000630416.2:297 ENST00000514193.5:297 AK293466:297 ENST00000515082.5:-309 BC022488:-309 AB209295:330 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| − | |distance= | + | |distance=-33 |
| − | |distance_to_tss= | + | |distance_to_tss=38 |
|end=46390095 | |end=46390095 | ||
|end_of_center_position=46390090 | |end_of_center_position=46390090 | ||
| Line 12: | Line 12: | ||
|gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | |gene_description=gamma-aminobutyric acid type A receptor alpha2 subunit | ||
|gene_id=2555 | |gene_id=2555 | ||
| − | |gene_name=gamma-aminobutyric acid type A receptor alpha2 | + | |gene_name=gamma-aminobutyric acid type A receptor subunit alpha2 |
|gene_source=HGNC:4076 | |gene_source=HGNC:4076 | ||
|gene_symbol=GABRA2 | |gene_symbol=GABRA2 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:4076 | |hgnc_mgi_id=HGNC:4076 | ||
|nearest_ensembl=ENSG00000151834 | |nearest_ensembl=ENSG00000151834 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001286827 |
|nearest_refseq=NM_000807 | |nearest_refseq=NM_000807 | ||
|nearest_unigene=Hs.48372 | |nearest_unigene=Hs.48372 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=46390084 | |start=46390084 | ||
|start_of_center_position=46390089 | |start_of_center_position=46390089 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000381620.9 NM_000807 NM_001377152 NM_001377144 NM_001286827 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_52019.1 | |tss_id=hg_52019.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A024R9X6 P47869 |
}} | }} | ||
Revision as of 03:39, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 46390089 |
|---|---|
| End of the center position in the TSS region: | 46390090 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000381620.9 NM_000807 NM_001377152 NM_001377144 NM_001286827 |
|---|---|
| Distance: | -33 |
| Num_trans: | 17 |
| All_trans: | ENST00000381620.9:-33 NM_000807:-33 NM_001377152:-33 NM_001377144:-33 NM_001286827:-33 ENST00000540012.5:46 S62907:157 NM_001377154:-205 NM_001377146:-205 NM_001377145:-205 NM_001377155:-205 ENST00000630416.2:297 ENST00000514193.5:297 AK293466:297 ENST00000515082.5:-309 BC022488:-309 AB209295:330 |
TATA-Box annotation
| Distance to TSS: | 38 |
|---|---|
| Nearest PromoterID: | NM_001286827 |
| Entrez ID: | 2555 |
| Nearest Unigene: | Hs.48372 |
| Nearest Refseq: | NM_000807 |
| Nearest Ensembl: | ENSG00000151834 |
| Gene Name: | gamma-aminobutyric acid type A receptor subunit alpha2 |
| Gene Alias: | - |
| Gene Description: | gamma-aminobutyric acid type A receptor alpha2 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
