Difference between revisions of "TSS:Hg 5203.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000486076.5 | + | |all_trans=ENST00000486076.5:0 AK313606:0 AK301882:0 ENST00000489549.5:-14 AK092230:-27 ENST00000368918.8:-30 NM_001323907:-30 NM_001323910:-30 NM_001323909:-30 NM_001323913:-30 NM_001323912:-30 NM_001323908:-30 NM_001323906:-30 NM_001323911:-30 NM_144618:-30 BC027033:-187 ENST00000462520.5:-213 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=44 |
|end=151070819 | |end=151070819 | ||
|end_of_center_position=151070805 | |end_of_center_position=151070805 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
|gene_alias=GABPB-2 | |gene_alias=GABPB-2 | ||
| − | |gene_description=GA binding protein transcription factor beta | + | |gene_description=GA binding protein transcription factor subunit beta 2 |
|gene_id=126626 | |gene_id=126626 | ||
| − | |gene_name=GA binding protein transcription factor beta | + | |gene_name=GA binding protein transcription factor subunit beta 2 |
|gene_source=HGNC:28441 | |gene_source=HGNC:28441 | ||
|gene_symbol=GABPB2 | |gene_symbol=GABPB2 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:28441 | |hgnc_mgi_id=HGNC:28441 | ||
|nearest_ensembl=ENSG00000143458 | |nearest_ensembl=ENSG00000143458 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001323911 |
|nearest_refseq=NM_144618 | |nearest_refseq=NM_144618 | ||
|nearest_unigene=Hs.15671 | |nearest_unigene=Hs.15671 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=151070790 | |start=151070790 | ||
|start_of_center_position=151070804 | |start_of_center_position=151070804 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000486076.5 | + | |transcript_name=ENST00000486076.5 AK313606 AK301882 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_5203.1 | |tss_id=hg_5203.1 | ||
Revision as of 03:39, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 151070804 |
|---|---|
| End of the center position in the TSS region: | 151070805 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000486076.5 AK313606 AK301882 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000486076.5:0 AK313606:0 AK301882:0 ENST00000489549.5:-14 AK092230:-27 ENST00000368918.8:-30 NM_001323907:-30 NM_001323910:-30 NM_001323909:-30 NM_001323913:-30 NM_001323912:-30 NM_001323908:-30 NM_001323906:-30 NM_001323911:-30 NM_144618:-30 BC027033:-187 ENST00000462520.5:-213 |
TATA-Box annotation
| Distance to TSS: | 44 |
|---|---|
| Nearest PromoterID: | NM_001323911 |
| Entrez ID: | 126626 |
| Nearest Unigene: | Hs.15671 |
| Nearest Refseq: | NM_144618 |
| Nearest Ensembl: | ENSG00000143458 |
| Gene Name: | GA binding protein transcription factor subunit beta 2 |
| Gene Alias: | GABPB-2 |
| Gene Description: | GA binding protein transcription factor subunit beta 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
