Difference between revisions of "TSS:Hg 57649.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000502541 | + | |all_trans=ENST00000502541.1:-93 |
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=-93 | |distance=-93 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-4937 |
|end=95737047 | |end=95737047 | ||
|end_of_center_position=95737040 | |end_of_center_position=95737040 | ||
| − | |entrez_id= | + | |entrez_id=83890 |
|gc_percent=0.283582 | |gc_percent=0.283582 | ||
| − | |gene_alias=- | + | |gene_alias=NYD-SP16 |
| − | |gene_description= | + | |gene_description=spermatogenesis associated 9 |
|gene_id=22836 | |gene_id=22836 | ||
|gene_name=Rho related BTB domain containing 3 | |gene_name=Rho related BTB domain containing 3 | ||
| Line 18: | Line 18: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:18757 | |hgnc_mgi_id=HGNC:18757 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000145757 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001349303 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_031952 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.50499 |
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=95737031 | |start=95737031 | ||
|start_of_center_position=95737039 | |start_of_center_position=95737039 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=87(CTTTAAATAGTG,+,0.00) |
| − | |transcript_name=ENST00000502541 | + | |transcript_name=ENST00000502541.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_57649.1 | |tss_id=hg_57649.1 | ||
Revision as of 05:51, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 95737039 |
|---|---|
| End of the center position in the TSS region: | 95737040 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000502541.1 |
|---|---|
| Distance: | -93 |
| Num_trans: | 1 |
| All_trans: | ENST00000502541.1:-93 |
TATA-Box annotation
| Distance to TSS: | -4937 |
|---|---|
| Nearest PromoterID: | NM_001349303 |
| Entrez ID: | 83890 |
| Nearest Unigene: | Hs.50499 |
| Nearest Refseq: | NM_031952 |
| Nearest Ensembl: | ENSG00000145757 |
| Gene Name: | Rho related BTB domain containing 3 |
| Gene Alias: | NYD-SP16 |
| Gene Description: | spermatogenesis associated 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.283582 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 87(CTTTAAATAGTG,+,0.00) |
