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Difference between revisions of "TSS:Hg 5785.1"

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Line 4: Line 4:
 
|TRKA=
 
|TRKA=
 
|Trk-A=
 
|Trk-A=
|all_trans=BC144239:0 BC136554:0 ENST00000368196.7:-18 uc001fqi.2:-18 M23102:-18 NM_002529:34 NM_001012331:34 ENST00000524377.5:49 ENST00000358660.3:49 uc001fqh.2:49 uc009wsk.2:49 AK312704:49 AK290759:49 ENST00000533630.1:68 uc057mdl.1:68 KJ534902:90 KJ534903:90 BC062580:91
+
|all_trans=BC144239:0 BC136554:0 ENST00000368196.7:-18 M23102:-18 ENST00000524377.7:20 NM_001012331:34 NM_002529:34 ENST00000358660.3:49 AK312704:49 AK290759:49 ENST00000533630.1:68 ENST00000675461.1:90 KJ534902:90 KJ534903:90 BC062580:91
 
|chr=chr1
 
|chr=chr1
 
|cpg_percent=0.1
 
|cpg_percent=0.1
Line 13: Line 13:
 
|entrez_id=4914
 
|entrez_id=4914
 
|gc_percent=0.741294
 
|gc_percent=0.741294
|gene_alias=MTC
+
|gene_alias=MTC{{!}}TRK{{!}}TRK1{{!}}TRKA{{!}}Trk-A{{!}}p140-TrkA
 
|gene_description=neurotrophic receptor tyrosine kinase 1
 
|gene_description=neurotrophic receptor tyrosine kinase 1
 
|gene_id=4914
 
|gene_id=4914
|gene_name="neurotrophic tyrosine kinase, receptor, type 1"
+
|gene_name=neurotrophic receptor tyrosine kinase 1
 
|gene_source=HGNC:8031
 
|gene_source=HGNC:8031
 
|gene_symbol=NTRK1
 
|gene_symbol=NTRK1
Line 23: Line 23:
 
|hgnc_mgi_id=HGNC:8031
 
|hgnc_mgi_id=HGNC:8031
 
|nearest_ensembl=ENSG00000198400
 
|nearest_ensembl=ENSG00000198400
|nearest_promoter_id=NM_001012331
+
|nearest_promoter_id=NM_002529
 
|nearest_refseq=NM_002529
 
|nearest_refseq=NM_002529
 
|nearest_unigene=Hs.406293
 
|nearest_unigene=Hs.406293
|num_trans=18
+
|num_trans=15
 
|p140-TrkA=
 
|p140-TrkA=
 
|species=human
 
|species=human

Revision as of 05:55, 18 June 2021

Basic information about the TSS


TSS ID:hg_5785.1
Species:human
Chr:chr1
TSS Classification:yes
Start:156860832
End:156860845
Strand:+
TSS Score:1
Start of the center position in the TSS region:156860838
End of the center position in the TSS region:156860839



Gene and protein annotation


Transcript_name:BC144239 BC136554
Distance:0
GeneID:4914
HGNC/MGI_ID:HGNC:8031
UniProt_ID:
Gene_name:neurotrophic receptor tyrosine kinase 1
Gene_symbol:NTRK1
Gene_synonyms:MTC TRK TRKA
Gene_source:HGNC:8031



Transcript annotation


Transcript_name:BC144239 BC136554
Distance:0
Num_trans:15
All_trans:BC144239:0 BC136554:0 ENST00000368196.7:-18 M23102:-18 ENST00000524377.7:20 NM_001012331:34 NM_002529:34 ENST00000358660.3:49 AK312704:49 AK290759:49 ENST00000533630.1:68 ENST00000675461.1:90 KJ534902:90 KJ534903:90 BC062580:91



TATA-Box annotation


Distance to TSS:-40
Nearest PromoterID:NM_002529
Entrez ID:4914
Nearest Unigene:Hs.406293
Nearest Refseq:NM_002529
Nearest Ensembl:ENSG00000198400
Gene Name:neurotrophic receptor tyrosine kinase 1
Gene Alias:MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA
Gene Description:neurotrophic receptor tyrosine kinase 1
Gene Type:protein-coding
CpG%:0.1
GC%:0.741294
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):