Difference between revisions of "TSS:Hg 5786.1"
From referenceTSS
| Line 4: | Line 4: | ||
|TRKA= | |TRKA= | ||
|Trk-A= | |Trk-A= | ||
| − | |all_trans= | + | |all_trans=ENST00000524377.7:0 NM_001012331:5 NM_002529:5 ENST00000358660.3:20 AK312704:20 AK290759:20 BC144239:-24 BC136554:-24 ENST00000533630.1:39 ENST00000368196.7:-44 M23102:-44 ENST00000675461.1:61 KJ534902:61 KJ534903:61 BC062580:62 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=-13 | |distance_to_tss=-13 | ||
|end=156860874 | |end=156860874 | ||
| Line 13: | Line 13: | ||
|entrez_id=4914 | |entrez_id=4914 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
| − | |gene_alias=MTC | + | |gene_alias=MTC{{!}}TRK{{!}}TRK1{{!}}TRKA{{!}}Trk-A{{!}}p140-TrkA |
|gene_description=neurotrophic receptor tyrosine kinase 1 | |gene_description=neurotrophic receptor tyrosine kinase 1 | ||
|gene_id=4914 | |gene_id=4914 | ||
| − | |gene_name= | + | |gene_name=neurotrophic receptor tyrosine kinase 1 |
|gene_source=HGNC:8031 | |gene_source=HGNC:8031 | ||
|gene_symbol=NTRK1 | |gene_symbol=NTRK1 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:8031 | |hgnc_mgi_id=HGNC:8031 | ||
|nearest_ensembl=ENSG00000198400 | |nearest_ensembl=ENSG00000198400 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_002529 |
|nearest_refseq=NM_002529 | |nearest_refseq=NM_002529 | ||
|nearest_unigene=Hs.406293 | |nearest_unigene=Hs.406293 | ||
| − | |num_trans= | + | |num_trans=15 |
|p140-TrkA= | |p140-TrkA= | ||
|species=human | |species=human | ||
| Line 32: | Line 32: | ||
|start_of_center_position=156860866 | |start_of_center_position=156860866 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000524377.7 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_5786.1 | |tss_id=hg_5786.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=P04629 | + | |uniprot_id=P04629 |
}} | }} | ||
Revision as of 05:55, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 156860866 |
|---|---|
| End of the center position in the TSS region: | 156860867 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000524377.7 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENST00000524377.7:0 NM_001012331:5 NM_002529:5 ENST00000358660.3:20 AK312704:20 AK290759:20 BC144239:-24 BC136554:-24 ENST00000533630.1:39 ENST00000368196.7:-44 M23102:-44 ENST00000675461.1:61 KJ534902:61 KJ534903:61 BC062580:62 |
TATA-Box annotation
| Distance to TSS: | -13 |
|---|---|
| Nearest PromoterID: | NM_002529 |
| Entrez ID: | 4914 |
| Nearest Unigene: | Hs.406293 |
| Nearest Refseq: | NM_002529 |
| Nearest Ensembl: | ENSG00000198400 |
| Gene Name: | neurotrophic receptor tyrosine kinase 1 |
| Gene Alias: | MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA |
| Gene Description: | neurotrophic receptor tyrosine kinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
