Difference between revisions of "TSS:Hg 59962.1"
From referenceTSS
| Line 2: | Line 2: | ||
|ECA2= | |ECA2= | ||
|GEFSP3= | |GEFSP3= | ||
| − | |all_trans= | + | |all_trans=ENST00000641017.1:0 KJ896852:0 KR712069:0 KR712070:0 KR712071:0 AK315200:-1 ENST00000640910.1:22 ENST00000523372.2:22 ENST00000356592.8:22 AK299640:22 BC074795:-23 ENST00000639554.1:24 ENST00000640739.1:24 ENST00000638877.1:45 ENST00000638782.1:-53 ENST00000639278.1:56 BC069348:-84 ENST00000522990.5:-117 ENST00000361925.9:-117 BC059389:-168 X15376:-211 ENST00000639549.1:-215 ENST00000414552.6:-216 BC036030:-216 ENST00000639424.1:-218 ENST00000639213.2:-218 NM_198904:-218 BC052926:-280 NM_198903:-349 NM_000816:-349 ENST00000638772.1:-360 ENST00000640985.1:-470 ENST00000639384.1:-480 |
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 11: | Line 11: | ||
|entrez_id=2566 | |entrez_id=2566 | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
| − | |gene_alias=CAE2 | + | |gene_alias=CAE2{{!}}ECA2{{!}}EIEE74{{!}}FEB8{{!}}GEFSP3 |
|gene_description=gamma-aminobutyric acid type A receptor gamma2 subunit | |gene_description=gamma-aminobutyric acid type A receptor gamma2 subunit | ||
|gene_id=2566 | |gene_id=2566 | ||
| − | |gene_name=gamma-aminobutyric acid type A receptor gamma2 | + | |gene_name=gamma-aminobutyric acid type A receptor subunit gamma2 |
|gene_source=HGNC:4087 | |gene_source=HGNC:4087 | ||
|gene_symbol=GABRG2 | |gene_symbol=GABRG2 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_000816 | |nearest_refseq=NM_000816 | ||
|nearest_unigene=Hs.7195 | |nearest_unigene=Hs.7195 | ||
| − | |num_trans= | + | |num_trans=33 |
|species=human | |species=human | ||
|start=162067990 | |start=162067990 | ||
|start_of_center_position=162068003 | |start_of_center_position=162068003 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000641017.1 KJ896852 KR712069 KR712070 KR712071 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_59962.1 | |tss_id=hg_59962.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A286YFI6 |
}} | }} | ||
Revision as of 06:44, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 162068003 |
|---|---|
| End of the center position in the TSS region: | 162068004 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000641017.1 KJ896852 KR712069 KR712070 KR712071 |
|---|---|
| Distance: | 0 |
| Num_trans: | 33 |
| All_trans: | ENST00000641017.1:0 KJ896852:0 KR712069:0 KR712070:0 KR712071:0 AK315200:-1 ENST00000640910.1:22 ENST00000523372.2:22 ENST00000356592.8:22 AK299640:22 BC074795:-23 ENST00000639554.1:24 ENST00000640739.1:24 ENST00000638877.1:45 ENST00000638782.1:-53 ENST00000639278.1:56 BC069348:-84 ENST00000522990.5:-117 ENST00000361925.9:-117 BC059389:-168 X15376:-211 ENST00000639549.1:-215 ENST00000414552.6:-216 BC036030:-216 ENST00000639424.1:-218 ENST00000639213.2:-218 NM_198904:-218 BC052926:-280 NM_198903:-349 NM_000816:-349 ENST00000638772.1:-360 ENST00000640985.1:-470 ENST00000639384.1:-480 |
TATA-Box annotation
| Distance to TSS: | 361 |
|---|---|
| Nearest PromoterID: | NM_198904 |
| Entrez ID: | 2566 |
| Nearest Unigene: | Hs.7195 |
| Nearest Refseq: | NM_000816 |
| Nearest Ensembl: | ENSG00000113327 |
| Gene Name: | gamma-aminobutyric acid type A receptor subunit gamma2 |
| Gene Alias: | CAE2|ECA2|EIEE74|FEB8|GEFSP3 |
| Gene Description: | gamma-aminobutyric acid type A receptor gamma2 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
