Difference between revisions of "TSS:Hg 6218.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000475570.1:0 ENST00000478866.5:0 | + | |all_trans=ENST00000677837.1:0 ENST00000679169.1:0 ENST00000678880.1:0 ENST00000677745.1:0 ENST00000677358.1:0 ENST00000677089.1:0 ENST00000480762.6:0 ENST00000678532.1:0 ENST00000677643.1:0 ENST00000678648.1:0 ENST00000677336.1:0 ENST00000677471.1:0 ENST00000677948.1:0 ENST00000678068.1:0 ENST00000676972.1:0 ENST00000475570.1:0 ENST00000678559.1:0 ENST00000676795.1:0 ENST00000478866.5:0 ENST00000677103.1:0 NM_001166159:0 NM_001377299:0 NM_001377302:0 NR_165188:0 AK301641:0 AK315977:0 AK314807:0 BC000170:0 AF013160:1 AF050640:1 AK222618:2 AK309871:4 ENST00000679218.1:-5 BC001456:6 DQ894087:7 Z36812:13 ENST00000679142.1:30 ENST00000678982.1:-40 ENST00000677063.1:-40 ENST00000677045.1:-40 ENST00000677736.1:-67 ENST00000678328.1:-67 ENST00000676583.1:-67 ENST00000493849.6:-67 ENST00000677657.1:-67 ENST00000676726.1:-67 ENST00000677916.1:-67 ENST00000677495.1:-67 ENST00000678484.1:-67 ENST00000679239.1:-67 ENST00000677050.1:-67 ENST00000678850.1:-67 ENST00000677653.1:-67 ENST00000678783.1:-67 ENST00000676871.1:-67 ENST00000677577.1:-67 ENST00000677453.1:-84 ENST00000676770.1:97 ENST00000677033.1:155 ENST00000678511.1:-162 ENST00000392179.5:-207 ENST00000467295.6:-496 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 9: | Line 9: | ||
|entrez_id=4720 | |entrez_id=4720 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=CI-49 | + | |gene_alias=CI-49{{!}}MC1DN6 |
|gene_description=NADH:ubiquinone oxidoreductase core subunit S2 | |gene_description=NADH:ubiquinone oxidoreductase core subunit S2 | ||
|gene_id=4720 | |gene_id=4720 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_004550 | |nearest_refseq=NM_004550 | ||
|nearest_unigene=Hs.173611 | |nearest_unigene=Hs.173611 | ||
| − | |num_trans= | + | |num_trans=62 |
|species=human | |species=human | ||
|start=161202353 | |start=161202353 | ||
|start_of_center_position=161202366 | |start_of_center_position=161202366 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000475570.1 ENST00000478866.5 | + | |transcript_name=ENST00000677837.1 ENST00000679169.1 ENST00000678880.1 ENST00000677745.1 ENST00000677358.1 ENST00000677089.1 ENST00000480762.6 ENST00000678532.1 ENST00000677643.1 ENST00000678648.1 ENST00000677336.1 ENST00000677471.1 ENST00000677948.1 ENST00000678068.1 ENST00000676972.1 ENST00000475570.1 ENST00000678559.1 ENST00000676795.1 ENST00000478866.5 ENST00000677103.1 NM_001166159 NM_001377299 NM_001377302 NR_165188 AK301641 AK315977 AK314807 BC000170 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_6218.1 | |tss_id=hg_6218.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B7Z792 B7Z9L2 | + | |uniprot_id=B7Z792 B7Z9L2 O75306 |
}} | }} | ||
Revision as of 07:36, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 161202366 |
|---|---|
| End of the center position in the TSS region: | 161202367 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000677837.1 ENST00000679169.1 ENST00000678880.1 ENST00000677745.1 ENST00000677358.1 ENST00000677089.1 ENST00000480762.6 ENST00000678532.1 ENST00000677643.1 ENST00000678648.1 ENST00000677336.1 ENST00000677471.1 ENST00000677948.1 ENST00000678068.1 ENST00000676972.1 ENST00000475570.1 ENST00000678559.1 ENST00000676795.1 ENST00000478866.5 ENST00000677103.1 NM_001166159 NM_001377299 NM_001377302 NR_165188 AK301641 AK315977 AK314807 BC000170 |
|---|---|
| Distance: | 0 |
| Num_trans: | 62 |
| All_trans: | ENST00000677837.1:0 ENST00000679169.1:0 ENST00000678880.1:0 ENST00000677745.1:0 ENST00000677358.1:0 ENST00000677089.1:0 ENST00000480762.6:0 ENST00000678532.1:0 ENST00000677643.1:0 ENST00000678648.1:0 ENST00000677336.1:0 ENST00000677471.1:0 ENST00000677948.1:0 ENST00000678068.1:0 ENST00000676972.1:0 ENST00000475570.1:0 ENST00000678559.1:0 ENST00000676795.1:0 ENST00000478866.5:0 ENST00000677103.1:0 NM_001166159:0 NM_001377299:0 NM_001377302:0 NR_165188:0 AK301641:0 AK315977:0 AK314807:0 BC000170:0 AF013160:1 AF050640:1 AK222618:2 AK309871:4 ENST00000679218.1:-5 BC001456:6 DQ894087:7 Z36812:13 ENST00000679142.1:30 ENST00000678982.1:-40 ENST00000677063.1:-40 ENST00000677045.1:-40 ENST00000677736.1:-67 ENST00000678328.1:-67 ENST00000676583.1:-67 ENST00000493849.6:-67 ENST00000677657.1:-67 ENST00000676726.1:-67 ENST00000677916.1:-67 ENST00000677495.1:-67 ENST00000678484.1:-67 ENST00000679239.1:-67 ENST00000677050.1:-67 ENST00000678850.1:-67 ENST00000677653.1:-67 ENST00000678783.1:-67 ENST00000676871.1:-67 ENST00000677577.1:-67 ENST00000677453.1:-84 ENST00000676770.1:97 ENST00000677033.1:155 ENST00000678511.1:-162 ENST00000392179.5:-207 ENST00000467295.6:-496 |
TATA-Box annotation
| Distance to TSS: | 219 |
|---|---|
| Nearest PromoterID: | NM_001166159 |
| Entrez ID: | 4720 |
| Nearest Unigene: | Hs.173611 |
| Nearest Refseq: | NM_004550 |
| Nearest Ensembl: | ENSG00000158864 |
| Gene Name: | NADH:ubiquinone oxidoreductase core subunit S2 |
| Gene Alias: | CI-49|MC1DN6 |
| Gene Description: | NADH:ubiquinone oxidoreductase core subunit S2 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
