Difference between revisions of "TSS:Hg 6357.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
− | |all_trans=ENST00000485769.5:-9 | + | |all_trans=ENST00000485769.5:-9 ENST00000420696.7:-25 NM_002585:-25 NM_001204961:138 NM_001204963:138 NM_001353131:138 ENST00000340699.7:185 AK291415:456 M86546:478 NM_001353130:500 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
Line 9: | Line 9: | ||
|entrez_id=5087 | |entrez_id=5087 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
− | |gene_alias= | + | |gene_alias=CAKUHED |
|gene_description=PBX homeobox 1 | |gene_description=PBX homeobox 1 | ||
|gene_id=5087 | |gene_id=5087 | ||
− | |gene_name= | + | |gene_name=PBX homeobox 1 |
|gene_source=HGNC:8632 | |gene_source=HGNC:8632 | ||
|gene_symbol=PBX1 | |gene_symbol=PBX1 | ||
Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:8632 | |hgnc_mgi_id=HGNC:8632 | ||
|nearest_ensembl=ENSG00000185630 | |nearest_ensembl=ENSG00000185630 | ||
− | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001353131 |
|nearest_refseq=NM_002585 | |nearest_refseq=NM_002585 | ||
|nearest_unigene=Hs.557097 | |nearest_unigene=Hs.557097 | ||
− | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=164559208 | |start=164559208 | ||
|start_of_center_position=164559215 | |start_of_center_position=164559215 | ||
|strand=+ | |strand=+ | ||
− | |transcript_name=ENST00000485769.5 | + | |transcript_name=ENST00000485769.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_6357.1 | |tss_id=hg_6357.1 |
Revision as of 08:08, 18 June 2021
Basic information about the TSS
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Start of the center position in the TSS region: | 164559215 |
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End of the center position in the TSS region: | 164559216 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | ENST00000485769.5 |
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Distance: | -9 |
Num_trans: | 10 |
All_trans: | ENST00000485769.5:-9 ENST00000420696.7:-25 NM_002585:-25 NM_001204961:138 NM_001204963:138 NM_001353131:138 ENST00000340699.7:185 AK291415:456 M86546:478 NM_001353130:500 |
TATA-Box annotation
Distance to TSS: | -145 |
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Nearest PromoterID: | NM_001353131 |
Entrez ID: | 5087 |
Nearest Unigene: | Hs.557097 |
Nearest Refseq: | NM_002585 |
Nearest Ensembl: | ENSG00000185630 |
Gene Name: | PBX homeobox 1 |
Gene Alias: | CAKUHED |
Gene Description: | PBX homeobox 1 |
Gene Type: | protein-coding |
CpG%: | 0.025 |
GC%: | 0.577114 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |