Difference between revisions of "TSS:Hg 6365.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000627490.2 | + | |all_trans=ENST00000627490.2:0 AK299673:0 BC101578:10 BC143435:10 BC143451:10 NM_001353130:-17 M86546:-39 AK291415:-61 ENST00000498497.2:62 ENST00000367897.5:62 ENST00000559240.5:62 BT006705:62 AB384885:62 ENST00000605467.1:252 ENST00000340699.7:-332 NM_001204961:-379 NM_001204963:-379 NM_001353131:-379 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=28 |
|end=164559761 | |end=164559761 | ||
|end_of_center_position=164559750 | |end_of_center_position=164559750 | ||
|entrez_id=5087 | |entrez_id=5087 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
| − | |gene_alias= | + | |gene_alias=CAKUHED |
|gene_description=PBX homeobox 1 | |gene_description=PBX homeobox 1 | ||
|gene_id=5087 | |gene_id=5087 | ||
| − | |gene_name= | + | |gene_name=PBX homeobox 1 |
|gene_source=HGNC:8632 | |gene_source=HGNC:8632 | ||
|gene_symbol=PBX1 | |gene_symbol=PBX1 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:8632 | |hgnc_mgi_id=HGNC:8632 | ||
|nearest_ensembl=ENSG00000185630 | |nearest_ensembl=ENSG00000185630 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001353130 |
|nearest_refseq=NM_002585 | |nearest_refseq=NM_002585 | ||
|nearest_unigene=Hs.557097 | |nearest_unigene=Hs.557097 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=164559738 | |start=164559738 | ||
|start_of_center_position=164559749 | |start_of_center_position=164559749 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000627490.2 | + | |transcript_name=ENST00000627490.2 AK299673 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_6365.1 | |tss_id=hg_6365.1 | ||
Revision as of 08:10, 18 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 164559749 |
|---|---|
| End of the center position in the TSS region: | 164559750 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000627490.2 AK299673 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000627490.2:0 AK299673:0 BC101578:10 BC143435:10 BC143451:10 NM_001353130:-17 M86546:-39 AK291415:-61 ENST00000498497.2:62 ENST00000367897.5:62 ENST00000559240.5:62 BT006705:62 AB384885:62 ENST00000605467.1:252 ENST00000340699.7:-332 NM_001204961:-379 NM_001204963:-379 NM_001353131:-379 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_001353130 |
| Entrez ID: | 5087 |
| Nearest Unigene: | Hs.557097 |
| Nearest Refseq: | NM_002585 |
| Nearest Ensembl: | ENSG00000185630 |
| Gene Name: | PBX homeobox 1 |
| Gene Alias: | CAKUHED |
| Gene Description: | PBX homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
