Difference between revisions of "TSS:Hg 6372.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000496120.6 | + | |all_trans=ENST00000496120.6:-5 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=-5 | |distance=-5 | ||
| − | |distance_to_tss= | + | |distance_to_tss=30642 |
|end=164590374 | |end=164590374 | ||
|end_of_center_position=164590365 | |end_of_center_position=164590365 | ||
|entrez_id=5087 | |entrez_id=5087 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias= | + | |gene_alias=CAKUHED |
|gene_description=PBX homeobox 1 | |gene_description=PBX homeobox 1 | ||
|gene_id=5087 | |gene_id=5087 | ||
| − | |gene_name= | + | |gene_name=PBX homeobox 1 |
|gene_source=HGNC:8632 | |gene_source=HGNC:8632 | ||
|gene_symbol=PBX1 | |gene_symbol=PBX1 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:8632 | |hgnc_mgi_id=HGNC:8632 | ||
|nearest_ensembl=ENSG00000185630 | |nearest_ensembl=ENSG00000185630 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001353130 |
|nearest_refseq=NM_002585 | |nearest_refseq=NM_002585 | ||
|nearest_unigene=Hs.557097 | |nearest_unigene=Hs.557097 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=164590354 | |start=164590354 | ||
|start_of_center_position=164590364 | |start_of_center_position=164590364 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000496120.6 | + | |transcript_name=ENST00000496120.6 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_6372.1 | |tss_id=hg_6372.1 | ||
Revision as of 08:11, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 164590364 |
|---|---|
| End of the center position in the TSS region: | 164590365 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000496120.6 |
|---|---|
| Distance: | -5 |
| Num_trans: | 1 |
| All_trans: | ENST00000496120.6:-5 |
TATA-Box annotation
| Distance to TSS: | 30642 |
|---|---|
| Nearest PromoterID: | NM_001353130 |
| Entrez ID: | 5087 |
| Nearest Unigene: | Hs.557097 |
| Nearest Refseq: | NM_002585 |
| Nearest Ensembl: | ENSG00000185630 |
| Gene Name: | PBX homeobox 1 |
| Gene Alias: | CAKUHED |
| Gene Description: | PBX homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
