Difference between revisions of "TSS:Hg 65588.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000606761.1:0 | + | |all_trans=ENST00000666739.1:0 ENST00000606761.1:0 ENST00000654379.1:0 ENST00000659006.1:0 ENST00000666518.1:0 ENST00000654506.1:0 ENST00000661051.1:0 ENST00000657867.1:0 ENST00000657816.1:0 ENST00000665374.1:0 NR_126018:0 NR_126019:0 BC042032:0 ENST00000655665.1:-5 ENST00000661740.1:-14 ENST00000607327.1:35 BC133670:35 ENST00000606767.1:80 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:52055 | |hgnc_mgi_id=HGNC:52055 | ||
|nearest_ensembl=ENSG00000272142 | |nearest_ensembl=ENSG00000272142 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_126019 |
|nearest_refseq=NR_126015 | |nearest_refseq=NR_126015 | ||
|nearest_unigene=Hs.131700 | |nearest_unigene=Hs.131700 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=5029971 | |start=5029971 | ||
|start_of_center_position=5029983 | |start_of_center_position=5029983 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000606761.1 NR_126019 | + | |transcript_name=ENST00000666739.1 ENST00000606761.1 ENST00000654379.1 ENST00000659006.1 ENST00000666518.1 ENST00000654506.1 ENST00000661051.1 ENST00000657867.1 ENST00000657816.1 ENST00000665374.1 NR_126018 NR_126019 BC042032 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_65588.1 | |tss_id=hg_65588.1 | ||
Revision as of 08:55, 18 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 5029983 |
|---|---|
| End of the center position in the TSS region: | 5029984 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000666739.1 ENST00000606761.1 ENST00000654379.1 ENST00000659006.1 ENST00000666518.1 ENST00000654506.1 ENST00000661051.1 ENST00000657867.1 ENST00000657816.1 ENST00000665374.1 NR_126018 NR_126019 BC042032 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000666739.1:0 ENST00000606761.1:0 ENST00000654379.1:0 ENST00000659006.1:0 ENST00000666518.1:0 ENST00000654506.1:0 ENST00000661051.1:0 ENST00000657867.1:0 ENST00000657816.1:0 ENST00000665374.1:0 NR_126018:0 NR_126019:0 BC042032:0 ENST00000655665.1:-5 ENST00000661740.1:-14 ENST00000607327.1:35 BC133670:35 ENST00000606767.1:80 |
TATA-Box annotation
| Distance to TSS: | 12 |
|---|---|
| Nearest PromoterID: | NR_126019 |
| Entrez ID: | 100129461 |
| Nearest Unigene: | Hs.131700 |
| Nearest Refseq: | NR_126015 |
| Nearest Ensembl: | ENSG00000272142 |
| Gene Name: | LYRM4 antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | LYRM4 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
