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Difference between revisions of "TSS:Hg 87559.1"

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Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
 
|RET/PCM-1=
 
|RET/PCM-1=
−
|all_trans=ENST00000517545.5:0 ENST00000517730.5:0 ENST00000518537.5:0 uc064kpl.1:0 uc064kpm.1:0 uc003wyh.4:0 BC098391:0 AK307583:0 BC000453:0 ENST00000518936.5:5 uc064kpn.1:5 BC065022:5 ENST00000518930.1:-7 uc064kpk.1:-7 ENST00000523055.5:9 uc064kpo.1:9 BC027477:9 ENST00000519253.5:27 uc011kyh.3:27 BC140946:27 ENST00000327578.9:-118 NM_006197:-118 NM_001315507:-118 NM_001315508:-118 uc064kpj.1:-118 L27841:-128 ENST00000325083.12:-135 uc003wyi.5:-135
+
|all_trans=ENST00000517545.5:0 ENST00000517730.5:0 ENST00000518537.5:0 NM_001352653:0 NM_001352649:0 NM_001352648:0 NM_001352654:0 NM_001352636:0 NM_001352652:0 NM_001352633:0 NM_001352637:0 NM_001352657:0 NM_001352635:0 NM_001352644:0 NM_001352640:0 NM_001352638:0 NM_001352647:0 NM_001352646:0 NM_001352632:0 NM_001352658:0 NM_001352655:0 NM_001352650:0 NM_001315507:0 NM_006197:0 NM_001352642:0 NM_001352634:0 NM_001352645:0 NM_001352643:0 NM_001352656:0 NM_001352641:0 NM_001352639:0 NM_001352651:0 NR_148032:0 BC098391:0 AK307583:0 BC000453:0 ENST00000518936.5:5 BC065022:5 ENST00000518930.1:-7 ENST00000523055.5:9 BC027477:9 LF372130:25 MA607707:25 ENST00000519253.5:27 BC140946:27 NM_001352660:-118 NM_001352659:-118 NM_001315508:-118 LF384362:-118 MA619939:-118 L27841:-128 ENST00000325083.12:-135
 
|chr=chr8
 
|chr=chr8
 
|cpg_percent=0.12
 
|cpg_percent=0.12
 
|distance=0
 
|distance=0
−
|distance_to_tss=131
+
|distance_to_tss=0
 
|end=17923001
 
|end=17923001
 
|end_of_center_position=17922988
 
|end_of_center_position=17922988
 
|entrez_id=5108
 
|entrez_id=5108
 
|gc_percent=0.701493
 
|gc_percent=0.701493
−
|gene_alias=PTC4
+
|gene_alias=PTC4{{!}}RET/PCM-1
 
|gene_description=pericentriolar material 1
 
|gene_description=pericentriolar material 1
 
|gene_id=5108
 
|gene_id=5108
Line 20: Line 20:
 
|hgnc_mgi_id=HGNC:8727
 
|hgnc_mgi_id=HGNC:8727
 
|nearest_ensembl=ENSG00000078674
 
|nearest_ensembl=ENSG00000078674
−
|nearest_promoter_id=NM_001315508
+
|nearest_promoter_id=NM_001352644
 
|nearest_refseq=NM_006197
 
|nearest_refseq=NM_006197
 
|nearest_unigene=Hs.491148
 
|nearest_unigene=Hs.491148
−
|num_trans=28
+
|num_trans=52
 
|species=human
 
|species=human
 
|start=17922974
 
|start=17922974
 
|start_of_center_position=17922987
 
|start_of_center_position=17922987
 
|strand=+
 
|strand=+
−
|transcript_name=ENST00000517545.5 ENST00000517730.5 ENST00000518537.5 uc064kpl.1 uc064kpm.1 uc003wyh.4 BC098391 AK307583 BC000453
+
|transcript_name=ENST00000517545.5 ENST00000517730.5 ENST00000518537.5 NM_001352653 NM_001352649 NM_001352648 NM_001352654 NM_001352636 NM_001352652 NM_001352633 NM_001352637 NM_001352657 NM_001352635 NM_001352644 NM_001352640 NM_001352638 NM_001352647 NM_001352646 NM_001352632 NM_001352658 NM_001352655 NM_001352650 NM_001315507 NM_006197 NM_001352642 NM_001352634 NM_001352645 NM_001352643 NM_001352656 NM_001352641 NM_001352639 NM_001352651 NR_148032 BC098391 AK307583 BC000453
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_87559.1
 
|tss_id=hg_87559.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=E7EV93 E9PGW9
+
|uniprot_id=B9EIS5 E7EV93 E9PGW9 Q15154
 
}}
 
}}

Revision as of 17:27, 18 June 2021

Basic information about the TSS

TSS ID:hg_87559.1
Species:human
Chr:chr8
TSS Classification:yes
Start:17922974
End:17923001
Strand:+
TSS Score:1
Start of the center position in the TSS region:17922987
End of the center position in the TSS region:17922988



Gene and protein annotation

Transcript_name:ENST00000517545.5 ENST00000517730.5 ENST00000518537.5 NM_001352653 NM_001352649 NM_001352648 NM_001352654 NM_001352636 NM_001352652 NM_001352633 NM_001352637 NM_001352657 NM_001352635 NM_001352644 NM_001352640 NM_001352638 NM_001352647 NM_001352646 NM_001352632 NM_001352658 NM_001352655 NM_001352650 NM_001315507 NM_006197 NM_001352642 NM_001352634 NM_001352645 NM_001352643 NM_001352656 NM_001352641 NM_001352639 NM_001352651 NR_148032 BC098391 AK307583 BC000453
Distance:0
GeneID:5108
HGNC/MGI_ID:HGNC:8727
UniProt_ID:B9EIS5 E7EV93 E9PGW9 Q15154
Gene_name:pericentriolar material 1
Gene_symbol:PCM1
Gene_synonyms:PTC4
Gene_source:HGNC:8727



Transcript annotation

Transcript_name:ENST00000517545.5 ENST00000517730.5 ENST00000518537.5 NM_001352653 NM_001352649 NM_001352648 NM_001352654 NM_001352636 NM_001352652 NM_001352633 NM_001352637 NM_001352657 NM_001352635 NM_001352644 NM_001352640 NM_001352638 NM_001352647 NM_001352646 NM_001352632 NM_001352658 NM_001352655 NM_001352650 NM_001315507 NM_006197 NM_001352642 NM_001352634 NM_001352645 NM_001352643 NM_001352656 NM_001352641 NM_001352639 NM_001352651 NR_148032 BC098391 AK307583 BC000453
Distance:0
Num_trans:52
All_trans:ENST00000517545.5:0 ENST00000517730.5:0 ENST00000518537.5:0 NM_001352653:0 NM_001352649:0 NM_001352648:0 NM_001352654:0 NM_001352636:0 NM_001352652:0 NM_001352633:0 NM_001352637:0 NM_001352657:0 NM_001352635:0 NM_001352644:0 NM_001352640:0 NM_001352638:0 NM_001352647:0 NM_001352646:0 NM_001352632:0 NM_001352658:0 NM_001352655:0 NM_001352650:0 NM_001315507:0 NM_006197:0 NM_001352642:0 NM_001352634:0 NM_001352645:0 NM_001352643:0 NM_001352656:0 NM_001352641:0 NM_001352639:0 NM_001352651:0 NR_148032:0 BC098391:0 AK307583:0 BC000453:0 ENST00000518936.5:5 BC065022:5 ENST00000518930.1:-7 ENST00000523055.5:9 BC027477:9 LF372130:25 MA607707:25 ENST00000519253.5:27 BC140946:27 NM_001352660:-118 NM_001352659:-118 NM_001315508:-118 LF384362:-118 MA619939:-118 L27841:-128 ENST00000325083.12:-135



TATA-Box annotation

Distance to TSS:0
Nearest PromoterID:NM_001352644
Entrez ID:5108
Nearest Unigene:Hs.491148
Nearest Refseq:NM_006197
Nearest Ensembl:ENSG00000078674
Gene Name:pericentriolar material 1
Gene Alias:PTC4|RET/PCM-1
Gene Description:pericentriolar material 1
Gene Type:protein-coding
CpG%:0.12
GC%:0.701493
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
Retrieved from "http://reftss.riken.jp/reftss-v3/index.php?title=TSS:Hg_87559.1&oldid=1290362"