Difference between revisions of "TSS:Hg 87733.1"
From referenceTSS
| Line 4: | Line 4: | ||
|PCP2= | |PCP2= | ||
|TLD= | |TLD= | ||
| − | |all_trans= | + | |all_trans=LF212583:-181 MA448160:-181 ENST00000397814.7:185 ENST00000354870.5:185 ENST00000520970.5:232 AB209590:232 ENST00000518913.5:297 BC002593:297 BC009305:297 BC032105:297 BC044626:297 BC142953:321 AK291620:332 LF210146:-341 MA445723:-341 ENST00000520982.5:369 ENST00000520626.6:369 BC136679:369 BC144365:369 BC144366:369 ENST00000518656.5:380 BC101763:380 BC101765:380 BC143338:380 ENST00000306349.13:417 ENST00000306385.10:417 NM_001199:417 NR_033403:417 NM_006129:417 NR_033404:417 M22488:422 ENST00000471755.5:445 ENST00000483364.5:445 ENST00000521385.5:445 Y08723:445 Y08724:445 Y08725:445 AB527418:450 KJ896503:450 U50330:451 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| − | |distance=- | + | |distance=-181 |
| − | |distance_to_tss=- | + | |distance_to_tss=-449 |
|end=22164955 | |end=22164955 | ||
|end_of_center_position=22164923 | |end_of_center_position=22164923 | ||
|entrez_id=649 | |entrez_id=649 | ||
|gc_percent=0.845771 | |gc_percent=0.845771 | ||
| − | |gene_alias=OI13 | + | |gene_alias=OI13{{!}}PCOLC{{!}}PCP{{!}}PCP2{{!}}TLD |
|gene_description=bone morphogenetic protein 1 | |gene_description=bone morphogenetic protein 1 | ||
|gene_id=649 | |gene_id=649 | ||
| − | |gene_name= | + | |gene_name=BMP1 |
|gene_source=HGNC:1067 | |gene_source=HGNC:1067 | ||
|gene_symbol=BMP1 | |gene_symbol=BMP1 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_001199 | |nearest_refseq=NM_001199 | ||
|nearest_unigene=Hs.1274 | |nearest_unigene=Hs.1274 | ||
| − | |num_trans= | + | |num_trans=40 |
|species=human | |species=human | ||
|start=22164890 | |start=22164890 | ||
|start_of_center_position=22164922 | |start_of_center_position=22164922 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF212583 MA448160 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_87733.1 | |tss_id=hg_87733.1 | ||
Latest revision as of 17:31, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22164922 |
|---|---|
| End of the center position in the TSS region: | 22164923 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF212583 MA448160 |
|---|---|
| Distance: | -181 |
| Num_trans: | 40 |
| All_trans: | LF212583:-181 MA448160:-181 ENST00000397814.7:185 ENST00000354870.5:185 ENST00000520970.5:232 AB209590:232 ENST00000518913.5:297 BC002593:297 BC009305:297 BC032105:297 BC044626:297 BC142953:321 AK291620:332 LF210146:-341 MA445723:-341 ENST00000520982.5:369 ENST00000520626.6:369 BC136679:369 BC144365:369 BC144366:369 ENST00000518656.5:380 BC101763:380 BC101765:380 BC143338:380 ENST00000306349.13:417 ENST00000306385.10:417 NM_001199:417 NR_033403:417 NM_006129:417 NR_033404:417 M22488:422 ENST00000471755.5:445 ENST00000483364.5:445 ENST00000521385.5:445 Y08723:445 Y08724:445 Y08725:445 AB527418:450 KJ896503:450 U50330:451 |
TATA-Box annotation
| Distance to TSS: | -449 |
|---|---|
| Nearest PromoterID: | NM_006129 |
| Entrez ID: | 649 |
| Nearest Unigene: | Hs.1274 |
| Nearest Refseq: | NM_001199 |
| Nearest Ensembl: | ENSG00000168487 |
| Gene Name: | BMP1 |
| Gene Alias: | OI13|PCOLC|PCP|PCP2|TLD |
| Gene Description: | bone morphogenetic protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.845771 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
