Difference between revisions of "TSS:Hg 8804.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000272133. | + | |all_trans=ENST00000272133.4:284 NM_001322305:284 NR_136287:284 NM_152495:284 AK096312:444 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=284 |
| − | |distance_to_tss=- | + | |distance_to_tss=-289 |
|end=224616033 | |end=224616033 | ||
|end_of_center_position=224616028 | |end_of_center_position=224616028 | ||
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|hgnc_mgi_id=HGNC:26802 | |hgnc_mgi_id=HGNC:26802 | ||
|nearest_ensembl=ENSG00000143786 | |nearest_ensembl=ENSG00000143786 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_152495 |
|nearest_refseq=NM_152495 | |nearest_refseq=NM_152495 | ||
|nearest_unigene=Hs.731723 | |nearest_unigene=Hs.731723 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=224616022 | |start=224616022 | ||
|start_of_center_position=224616027 | |start_of_center_position=224616027 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=8(GTGTTTAAAGAG,-,0.00) |
| − | |transcript_name=ENST00000272133. | + | |transcript_name=ENST00000272133.4 NM_001322305 NR_136287 NM_152495 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_8804.1 | |tss_id=hg_8804.1 | ||
Revision as of 17:38, 18 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 224616027 |
|---|---|
| End of the center position in the TSS region: | 224616028 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000272133.4 NM_001322305 NR_136287 NM_152495 |
|---|---|
| Distance: | 284 |
| Num_trans: | 5 |
| All_trans: | ENST00000272133.4:284 NM_001322305:284 NR_136287:284 NM_152495:284 AK096312:444 |
TATA-Box annotation
| Distance to TSS: | -289 |
|---|---|
| Nearest PromoterID: | NM_152495 |
| Entrez ID: | 149111 |
| Nearest Unigene: | Hs.731723 |
| Nearest Refseq: | NM_152495 |
| Nearest Ensembl: | ENSG00000143786 |
| Gene Name: | cornichon family AMPA receptor auxiliary protein 3 |
| Gene Alias: | CNIH-3 |
| Gene Description: | cornichon family AMPA receptor auxiliary protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 8(GTGTTTAAAGAG,-,0.00) |
