Difference between revisions of "TSS:Hg 89122.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NR_034102:477 | + | |all_trans=ENST00000665390.1:410 ENST00000521441.2:440 ENST00000671254.1:451 NR_034102:477 ENST00000657723.1:491 ENST00000671640.1:491 ENST00000658332.1:491 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=410 |
|distance_to_tss=-480 | |distance_to_tss=-480 | ||
|end=64372741 | |end=64372741 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_034102 | |nearest_refseq=NR_034102 | ||
|nearest_unigene=Hs.7023 | |nearest_unigene=Hs.7023 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=64372735 | |start=64372735 | ||
|start_of_center_position=64372738 | |start_of_center_position=64372738 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-70(CCCCATAAAAGA,-,0.00),-18(CCATTTTAAAGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000665390.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_89122.1 | |tss_id=hg_89122.1 | ||
Revision as of 18:03, 18 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 64372738 |
|---|---|
| End of the center position in the TSS region: | 64372739 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000665390.1 |
|---|---|
| Distance: | 410 |
| Num_trans: | 7 |
| All_trans: | ENST00000665390.1:410 ENST00000521441.2:440 ENST00000671254.1:451 NR_034102:477 ENST00000657723.1:491 ENST00000671640.1:491 ENST00000658332.1:491 |
TATA-Box annotation
| Distance to TSS: | -480 |
|---|---|
| Nearest PromoterID: | NR_034102 |
| Entrez ID: | 100130155 |
| Nearest Unigene: | Hs.7023 |
| Nearest Refseq: | NR_034102 |
| Nearest Ensembl: | ENSG00000254377 |
| Gene Name: | MIR124-2 host gene |
| Gene Alias: | LINC00966 |
| Gene Description: | MIR124-2 host gene |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -70(CCCCATAAAAGA,-,0.00),-18(CCATTTTAAAGC,-,0.00) |
