Difference between revisions of "TSS:Hg 92911.1"
From referenceTSS
| Line 8: | Line 8: | ||
|RAM1= | |RAM1= | ||
|Ram-1= | |Ram-1= | ||
| − | |all_trans= | + | |all_trans=ENST00000520262.6:0 ENST00000517366.1:0 NM_001257180:0 AK291202:-191 LF371616:246 MA607193:246 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-16 |
|end=42501269 | |end=42501269 | ||
|end_of_center_position=42501247 | |end_of_center_position=42501247 | ||
|entrez_id=6575 | |entrez_id=6575 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| − | |gene_alias=GLVR-2 | + | |gene_alias=GLVR-2{{!}}GLVR2{{!}}IBGC1{{!}}IBGC3{{!}}MLVAR{{!}}PIT-2{{!}}PIT2{{!}}RAM1{{!}}Ram-1 |
|gene_description=solute carrier family 20 member 2 | |gene_description=solute carrier family 20 member 2 | ||
|gene_id=6575 | |gene_id=6575 | ||
| Line 35: | Line 35: | ||
|start_of_center_position=42501246 | |start_of_center_position=42501246 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-44(CCATTAAGAGGA,+,0.00) |
| − | |transcript_name=ENST00000517366.1 | + | |transcript_name=ENST00000520262.6 ENST00000517366.1 NM_001257180 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_92911.1 | |tss_id=hg_92911.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=E5RGJ6 | + | |uniprot_id=A0A384MR38 E5RGJ6 Q08357 |
}} | }} | ||
Revision as of 19:32, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 42501246 |
|---|---|
| End of the center position in the TSS region: | 42501247 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000520262.6 ENST00000517366.1 NM_001257180 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | ENST00000520262.6:0 ENST00000517366.1:0 NM_001257180:0 AK291202:-191 LF371616:246 MA607193:246 |
TATA-Box annotation
| Distance to TSS: | -16 |
|---|---|
| Nearest PromoterID: | NM_001257180 |
| Entrez ID: | 6575 |
| Nearest Unigene: | Hs.653173 |
| Nearest Refseq: | NM_006749 |
| Nearest Ensembl: | ENSG00000168575 |
| Gene Name: | solute carrier family 20 member 2 |
| Gene Alias: | GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 |
| Gene Description: | solute carrier family 20 member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -44(CCATTAAGAGGA,+,0.00) |
