Difference between revisions of "TSS:Hg 94711.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HCCC11_v1= | |HCCC11_v1= | ||
|HCCC11_v2= | |HCCC11_v2= | ||
| − | |all_trans=ENST00000520576.5:-285 ENST00000517519.5:-285 ENST00000523330.1:-285 NR_024479 | + | |all_trans=ENST00000654317.1:94 ENST00000661117.1:109 ENST00000520576.5:-285 ENST00000517519.5:-285 ENST00000523330.1:-285 NR_024479:-285 AY211906:-285 AY211907:-285 AY211908:-285 AY225521:-285 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=94 |
|distance_to_tss=288 | |distance_to_tss=288 | ||
|end=123202458 | |end=123202458 | ||
| Line 11: | Line 11: | ||
|entrez_id=100131726 | |entrez_id=100131726 | ||
|gc_percent=0.442786 | |gc_percent=0.442786 | ||
| − | |gene_alias=HCCC11 | + | |gene_alias=HCCC11{{!}}HCCC11_v1{{!}}HCCC11_v2 |
|gene_description=FAM83A antisense RNA 1 | |gene_description=FAM83A antisense RNA 1 | ||
|gene_id=100131726 | |gene_id=100131726 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NR_024479 | |nearest_refseq=NR_024479 | ||
|nearest_unigene=Hs.660862 | |nearest_unigene=Hs.660862 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=123202451 | |start=123202451 | ||
|start_of_center_position=123202454 | |start_of_center_position=123202454 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000654317.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_94711.1 | |tss_id=hg_94711.1 | ||
Revision as of 20:13, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 123202454 |
|---|---|
| End of the center position in the TSS region: | 123202455 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000654317.1 |
|---|---|
| Distance: | 94 |
| Num_trans: | 10 |
| All_trans: | ENST00000654317.1:94 ENST00000661117.1:109 ENST00000520576.5:-285 ENST00000517519.5:-285 ENST00000523330.1:-285 NR_024479:-285 AY211906:-285 AY211907:-285 AY211908:-285 AY225521:-285 |
TATA-Box annotation
| Distance to TSS: | 288 |
|---|---|
| Nearest PromoterID: | NR_024479 |
| Entrez ID: | 100131726 |
| Nearest Unigene: | Hs.660862 |
| Nearest Refseq: | NR_024479 |
| Nearest Ensembl: | ENSG00000204949 |
| Gene Name: | FAM83A antisense RNA 1 |
| Gene Alias: | HCCC11|HCCC11_v1|HCCC11_v2 |
| Gene Description: | FAM83A antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.442786 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
