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Difference between revisions of "TSS:Hg 95722.1"

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Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
−
|all_trans=ENST00000529163.5:0 ENST00000394920.6:0 ENST00000527914.5:0 ENST00000532702.1:0 ENST00000525232.5:0 ENST00000531767.1:0 NM_033301:0 NM_001317782:0 NM_001317771:0 uc064rpv.1:0 uc003zeb.4:0 uc064rpy.1:0 uc064rqc.1:0 uc033ccx.2:0 uc064rqd.1:0 BC000077:0 BC093064:0 AK301073:0 AK289459:0 AK309619:0 D28421:0 BC013104:3 NM_000973:-17 ENST00000528957.5:30 uc064rpz.1:30 BC012197:37 ENST00000262584.7:-158 uc003zec.4:-158 ENST00000533397.5:228 uc064rqb.1:228 ENST00000529920.5:238 uc064rqa.1:238 BC007935:238 BC030151:238 AB590228:247 DQ893309:250 EU176553:250 CU674022:251 BT007379:252 CR457046:252 ENST00000528296.5:256 uc064rpx.1:256 ENST00000531975.5:324 uc064rpu.1:324 ENST00000526668.5:422 uc064rpw.1:422 BC000047:465
+
|all_trans=ENST00000529163.5:0 ENST00000394920.6:0 ENST00000528957.6:0 ENST00000527914.5:0 ENST00000532702.1:0 ENST00000525232.5:0 ENST00000531767.1:0 NM_001317782:0 NM_000973:0 NM_001317771:0 NM_033301:0 BC000077:0 BC093064:0 AK301073:0 AK289459:0 AK309619:0 D28421:0 BC013104:3 BC012197:37 ENST00000262584.7:-158 ENST00000533397.5:228 ENST00000529920.5:238 BC007935:238 BC030151:238 AB590228:247 DQ893309:250 EU176553:250 CU674022:251 BT007379:252 CR457046:252 ENST00000528296.5:256 ENST00000531975.5:324 LP997127:390 LY480927:390 LY495824:390 LY496511:390 LY497149:390 LY499157:390 LY500367:390 LZ238771:390 MP073629:390 MP080402:390 MS868989:390 MS880472:390 MS884336:390 MS885486:390 MS994519:390 MA822648:390 LY616535:390 MB473037:390 LP951752:390 LQ724883:390 LY480804:390 LY495674:390 LY496301:390 LY496956:390 LY498887:390 LY500359:390 LZ238512:390 MS868839:390 MS880202:390 MS884143:390 MS885478:390 MS994309:390 MA822312:390 LY616276:390 MB472806:390 ENST00000526668.5:422 BC000047:465
 
|chr=chr8
 
|chr=chr8
 
|cpg_percent=0.12
 
|cpg_percent=0.12
 
|distance=0
 
|distance=0
−
|distance_to_tss=-16
+
|distance_to_tss=-15
 
|end=144792429
 
|end=144792429
 
|end_of_center_position=144792405
 
|end_of_center_position=144792405
Line 19: Line 19:
 
|hgnc_mgi_id=HGNC:10368
 
|hgnc_mgi_id=HGNC:10368
 
|nearest_ensembl=ENSG00000161016
 
|nearest_ensembl=ENSG00000161016
−
|nearest_promoter_id=NM_001317782
+
|nearest_promoter_id=NM_001317771
 
|nearest_refseq=NM_000973
 
|nearest_refseq=NM_000973
 
|nearest_unigene=Hs.178551
 
|nearest_unigene=Hs.178551
−
|num_trans=47
+
|num_trans=69
 
|species=human
 
|species=human
 
|start=144792380
 
|start=144792380
 
|start_of_center_position=144792404
 
|start_of_center_position=144792404
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000529163.5 ENST00000394920.6 ENST00000527914.5 ENST00000532702.1 ENST00000525232.5 ENST00000531767.1 NM_033301 NM_001317782 NM_001317771 uc064rpv.1 uc003zeb.4 uc064rpy.1 uc064rqc.1 uc033ccx.2 uc064rqd.1 BC000077 BC093064 AK301073 AK289459 AK309619 D28421
+
|transcript_name=ENST00000529163.5 ENST00000394920.6 ENST00000528957.6 ENST00000527914.5 ENST00000532702.1 ENST00000525232.5 ENST00000531767.1 NM_001317782 NM_000973 NM_001317771 NM_033301 BC000077 BC093064 AK301073 AK289459 AK309619 D28421
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_95722.1
 
|tss_id=hg_95722.1

Revision as of 20:37, 18 June 2021

Basic information about the TSS

TSS ID:hg_95722.1
Species:human
Chr:chr8
TSS Classification:yes
Start:144792380
End:144792429
Strand:-
TSS Score:1
Start of the center position in the TSS region:144792404
End of the center position in the TSS region:144792405



Gene and protein annotation

Transcript_name:ENST00000529163.5 ENST00000394920.6 ENST00000528957.6 ENST00000527914.5 ENST00000532702.1 ENST00000525232.5 ENST00000531767.1 NM_001317782 NM_000973 NM_001317771 NM_033301 BC000077 BC093064 AK301073 AK289459 AK309619 D28421
Distance:0
GeneID:6132
HGNC/MGI_ID:HGNC:10368
UniProt_ID:B4DVG7 E9PKZ0 E9PP36 P62917
Gene_name:ribosomal protein L8
Gene_symbol:RPL8
Gene_synonyms:L8
Gene_source:HGNC:10368



Transcript annotation

Transcript_name:ENST00000529163.5 ENST00000394920.6 ENST00000528957.6 ENST00000527914.5 ENST00000532702.1 ENST00000525232.5 ENST00000531767.1 NM_001317782 NM_000973 NM_001317771 NM_033301 BC000077 BC093064 AK301073 AK289459 AK309619 D28421
Distance:0
Num_trans:69
All_trans:ENST00000529163.5:0 ENST00000394920.6:0 ENST00000528957.6:0 ENST00000527914.5:0 ENST00000532702.1:0 ENST00000525232.5:0 ENST00000531767.1:0 NM_001317782:0 NM_000973:0 NM_001317771:0 NM_033301:0 BC000077:0 BC093064:0 AK301073:0 AK289459:0 AK309619:0 D28421:0 BC013104:3 BC012197:37 ENST00000262584.7:-158 ENST00000533397.5:228 ENST00000529920.5:238 BC007935:238 BC030151:238 AB590228:247 DQ893309:250 EU176553:250 CU674022:251 BT007379:252 CR457046:252 ENST00000528296.5:256 ENST00000531975.5:324 LP997127:390 LY480927:390 LY495824:390 LY496511:390 LY497149:390 LY499157:390 LY500367:390 LZ238771:390 MP073629:390 MP080402:390 MS868989:390 MS880472:390 MS884336:390 MS885486:390 MS994519:390 MA822648:390 LY616535:390 MB473037:390 LP951752:390 LQ724883:390 LY480804:390 LY495674:390 LY496301:390 LY496956:390 LY498887:390 LY500359:390 LZ238512:390 MS868839:390 MS880202:390 MS884143:390 MS885478:390 MS994309:390 MA822312:390 LY616276:390 MB472806:390 ENST00000526668.5:422 BC000047:465



TATA-Box annotation

Distance to TSS:-15
Nearest PromoterID:NM_001317771
Entrez ID:6132
Nearest Unigene:Hs.178551
Nearest Refseq:NM_000973
Nearest Ensembl:ENSG00000161016
Gene Name:ribosomal protein L8
Gene Alias:L8
Gene Description:ribosomal protein L8
Gene Type:protein-coding
CpG%:0.12
GC%:0.691542
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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