Difference between revisions of "TSS:Hg 96304.1"
From referenceTSS
| Line 4: | Line 4: | ||
|NCRNA00089= | |NCRNA00089= | ||
|PCAT12= | |PCAT12= | ||
| − | |all_trans= | + | |all_trans=ENST00000421632.2:14 EU741058:14 ENST00000651904.1:23 ENST00000651784.1:33 ENST00000650946.1:52 ENST00000582301.5:-159 ENST00000582072.5:-159 ENST00000584816.5:-159 ENST00000584020.5:-159 ENST00000577551.5:-159 ENST00000584637.5:-159 ENST00000581051.5:-159 GQ495924:-159 GQ495918:-159 GQ495919:-159 GQ495920:-159 GQ495921:-159 GQ495922:-159 GQ495923:-159 ENST00000645313.2:-238 ENST00000455933.7:-239 ENST00000584351.5:-270 ENST00000583719.5:-270 ENST00000580467.5:-270 ENST00000585267.5:-270 ENST00000580576.6:-270 ENST00000428597.6:-270 NR_003529:-270 NR_120536:-270 NR_047542:-270 NR_047541:-270 NR_047540:-270 NR_047539:-270 NR_047538:-270 NR_047537:-270 NR_047536:-270 NR_047535:-270 NR_047534:-270 NR_047533:-270 NR_047532:-270 NR_047543:-270 DQ485454:-270 GQ422823:-270 GQ495926:-270 GQ495925:-270 AB548314:-270 DQ485453:-270 ENST00000652420.1:-283 ENST00000578935.1:401 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=14 | |distance=14 | ||
| − | |distance_to_tss= | + | |distance_to_tss=253 |
|end=21995081 | |end=21995081 | ||
|end_of_center_position=21995071 | |end_of_center_position=21995071 | ||
| − | |entrez_id= | + | |entrez_id=1029 |
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias= | + | |gene_alias=ARF{{!}}CDK4I{{!}}CDKN2{{!}}CMM2{{!}}INK4{{!}}INK4A{{!}}MLM{{!}}MTS-1{{!}}MTS1{{!}}P14{{!}}P14ARF{{!}}P16{{!}}P16-INK4A{{!}}P16INK4{{!}}P16INK4A{{!}}P19{{!}}P19ARF{{!}}TP16 |
| − | |gene_description= | + | |gene_description=cyclin dependent kinase inhibitor 2A |
|gene_id=100048912 | |gene_id=100048912 | ||
|gene_name=CDKN2B antisense RNA 1 | |gene_name=CDKN2B antisense RNA 1 | ||
|gene_source=HGNC:34341 | |gene_source=HGNC:34341 | ||
|gene_symbol=CDKN2B-AS1 | |gene_symbol=CDKN2B-AS1 | ||
| − | |gene_synonyms=ANRIL CDKN2B-AS | + | |gene_synonyms=ANRIL CDKN2B-AS NCRNA00089 PCAT12 RP11-145E5.4 p15AS |
| − | |gene_type= | + | |gene_type=protein-coding |
|hgnc_mgi_id=HGNC:34341 | |hgnc_mgi_id=HGNC:34341 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000147889 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001363763 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_000077 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.512599 |
| − | |num_trans= | + | |num_trans=49 |
|p15AS= | |p15AS= | ||
|species=human | |species=human | ||
| Line 32: | Line 32: | ||
|start_of_center_position=21995070 | |start_of_center_position=21995070 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000421632.2 EU741058 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_96304.1 | |tss_id=hg_96304.1 | ||
Revision as of 20:51, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 21995070 |
|---|---|
| End of the center position in the TSS region: | 21995071 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000421632.2 EU741058 |
|---|---|
| Distance: | 14 |
| Num_trans: | 49 |
| All_trans: | ENST00000421632.2:14 EU741058:14 ENST00000651904.1:23 ENST00000651784.1:33 ENST00000650946.1:52 ENST00000582301.5:-159 ENST00000582072.5:-159 ENST00000584816.5:-159 ENST00000584020.5:-159 ENST00000577551.5:-159 ENST00000584637.5:-159 ENST00000581051.5:-159 GQ495924:-159 GQ495918:-159 GQ495919:-159 GQ495920:-159 GQ495921:-159 GQ495922:-159 GQ495923:-159 ENST00000645313.2:-238 ENST00000455933.7:-239 ENST00000584351.5:-270 ENST00000583719.5:-270 ENST00000580467.5:-270 ENST00000585267.5:-270 ENST00000580576.6:-270 ENST00000428597.6:-270 NR_003529:-270 NR_120536:-270 NR_047542:-270 NR_047541:-270 NR_047540:-270 NR_047539:-270 NR_047538:-270 NR_047537:-270 NR_047536:-270 NR_047535:-270 NR_047534:-270 NR_047533:-270 NR_047532:-270 NR_047543:-270 DQ485454:-270 GQ422823:-270 GQ495926:-270 GQ495925:-270 AB548314:-270 DQ485453:-270 ENST00000652420.1:-283 ENST00000578935.1:401 |
TATA-Box annotation
| Distance to TSS: | 253 |
|---|---|
| Nearest PromoterID: | NM_001363763 |
| Entrez ID: | 1029 |
| Nearest Unigene: | Hs.512599 |
| Nearest Refseq: | NM_000077 |
| Nearest Ensembl: | ENSG00000147889 |
| Gene Name: | CDKN2B antisense RNA 1 |
| Gene Alias: | ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16 |
| Gene Description: | cyclin dependent kinase inhibitor 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
