Difference between revisions of "TSS:Hg 96419.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000451672.2:0 ENST00000644531.1:0 BC013655:1 ENST00000425533.1:3 LF206414:-14 MA441991:-14 NR_146061:-72 NR_146063:-72 ENST00000635960.1:198 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 9: | Line 9: | ||
|entrez_id=100129250 | |entrez_id=100129250 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=C9orf133 | + | |gene_alias=C9orf133{{!}}TOPORS-AS1 |
| − | |gene_description= | + | |gene_description=small integral membrane protein 27 |
|gene_id=100129250 | |gene_id=100129250 | ||
| − | |gene_name= | + | |gene_name=small integral membrane protein 27 |
|gene_source=HGNC:31420 | |gene_source=HGNC:31420 | ||
| − | |gene_symbol= | + | |gene_symbol=SMIM27 |
|gene_synonyms= | |gene_synonyms= | ||
| − | |gene_type= | + | |gene_type=protein-coding |
|hgnc_mgi_id=HGNC:31420 | |hgnc_mgi_id=HGNC:31420 | ||
|nearest_ensembl=ENSG00000235453 | |nearest_ensembl=ENSG00000235453 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_146061 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_001349118 |
|nearest_unigene=Hs.664395 | |nearest_unigene=Hs.664395 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=32552305 | |start=32552305 | ||
|start_of_center_position=32552325 | |start_of_center_position=32552325 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000451672.2 ENST00000644531.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_96419.1 | |tss_id=hg_96419.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A286YEC1 A0A2R8Y3B0 |
}} | }} | ||
Revision as of 20:53, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32552325 |
|---|---|
| End of the center position in the TSS region: | 32552326 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000451672.2 ENST00000644531.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENST00000451672.2:0 ENST00000644531.1:0 BC013655:1 ENST00000425533.1:3 LF206414:-14 MA441991:-14 NR_146061:-72 NR_146063:-72 ENST00000635960.1:198 |
TATA-Box annotation
| Distance to TSS: | 91 |
|---|---|
| Nearest PromoterID: | NR_146061 |
| Entrez ID: | 100129250 |
| Nearest Unigene: | Hs.664395 |
| Nearest Refseq: | NM_001349118 |
| Nearest Ensembl: | ENSG00000235453 |
| Gene Name: | small integral membrane protein 27 |
| Gene Alias: | C9orf133|TOPORS-AS1 |
| Gene Description: | small integral membrane protein 27 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
