Difference between revisions of "TSS:Mm 100049.1"
From referenceTSS
| Line 3: | Line 3: | ||
|NHERF-1= | |NHERF-1= | ||
|NHERF1= | |NHERF1= | ||
| − | |all_trans=U74079:-15 BC038656:50 BC085141:-62 AK153558:-76 ENSMUST00000021077.3:-77 NM_012030 | + | |all_trans=U74079:-15 BC038656:50 BC085141:-62 AK153558:-76 ENSMUST00000021077.3:-77 NM_012030:-77 AK085210:-77 AK168894:-77 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| Line 12: | Line 12: | ||
|entrez_id=26941 | |entrez_id=26941 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=EBP-50 | + | |gene_alias=EBP-50{{!}}NHE-RF{{!}}NHERF-1{{!}}NHERF1 |
| − | |gene_description= | + | |gene_description=solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1 |
|gene_name=Slc9a3r1 | |gene_name=Slc9a3r1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 20: | Line 20: | ||
|nearest_refseq=NM_012030 | |nearest_refseq=NM_012030 | ||
|nearest_unigene=Mm.27842 | |nearest_unigene=Mm.27842 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=mouse | |species=mouse | ||
|start=115163417 | |start=115163417 | ||
Latest revision as of 16:07, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 115163418 |
|---|---|
| End of the center position in the TSS region: | 115163419 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | U74079 |
|---|---|
| Distance: | -15 |
| Num_trans: | 8 |
| All_trans: | U74079:-15 BC038656:50 BC085141:-62 AK153558:-76 ENSMUST00000021077.3:-77 NM_012030:-77 AK085210:-77 AK168894:-77 |
TATA-Box annotation
| Distance to TSS: | 77 |
|---|---|
| Nearest PromoterID: | NM_012030 |
| Entrez ID: | 26941 |
| Nearest Unigene: | Mm.27842 |
| Nearest Refseq: | NM_012030 |
| Nearest Ensembl: | ENSMUSG00000020733 |
| Gene Name: | Slc9a3r1 |
| Gene Alias: | EBP-50|NHE-RF|NHERF-1|NHERF1 |
| Gene Description: | solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
