Difference between revisions of "TSS:Mm 10006.1"
From referenceTSS
| Line 3: | Line 3: | ||
|L2dtl= | |L2dtl= | ||
|Ramp= | |Ramp= | ||
| − | |all_trans=ENSMUST00000027933.10 | + | |all_trans=ENSMUST00000027933.10:0 NM_001305233:0 NM_029766:0 ENSMUST00000195650.5:17 AK154594:17 AK166351:17 ENSMUST00000195765.5:24 AB095735:24 AB095736:24 ENSMUST00000193977.5:25 ENSMUST00000192014.1:25 AK164249:25 AK169601:25 AK133177:25 AK164999:25 AK017855:25 ENSMUST00000194064.1:27 AK012919:27 AK054412:36 AK045014:39 BC060208:64 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| Line 12: | Line 12: | ||
|entrez_id=76843 | |entrez_id=76843 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=2810047L02Rik | + | |gene_alias=2810047L02Rik{{!}}5730564G15Rik{{!}}L2dtl{{!}}Ramp |
|gene_description=denticleless E3 ubiquitin protein ligase | |gene_description=denticleless E3 ubiquitin protein ligase | ||
|gene_id=76843 | |gene_id=76843 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=MGI:1924093 | |hgnc_mgi_id=MGI:1924093 | ||
|nearest_ensembl=ENSMUSG00000037474 | |nearest_ensembl=ENSMUSG00000037474 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_029766 |
|nearest_refseq=NM_029766 | |nearest_refseq=NM_029766 | ||
|nearest_unigene=Mm.189102 | |nearest_unigene=Mm.189102 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=mouse | |species=mouse | ||
|start=191575537 | |start=191575537 | ||
|start_of_center_position=191575543 | |start_of_center_position=191575543 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000027933.10 NM_029766 | + | |transcript_name=ENSMUST00000027933.10 NM_001305233 NM_029766 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_10006.1 | |tss_id=mm_10006.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q3TLR7 | + | |uniprot_id=Q3TLR7 |
}} | }} | ||
Revision as of 16:08, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 191575543 |
|---|---|
| End of the center position in the TSS region: | 191575544 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000027933.10 NM_001305233 NM_029766 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENSMUST00000027933.10:0 NM_001305233:0 NM_029766:0 ENSMUST00000195650.5:17 AK154594:17 AK166351:17 ENSMUST00000195765.5:24 AB095735:24 AB095736:24 ENSMUST00000193977.5:25 ENSMUST00000192014.1:25 AK164249:25 AK169601:25 AK133177:25 AK164999:25 AK017855:25 ENSMUST00000194064.1:27 AK012919:27 AK054412:36 AK045014:39 BC060208:64 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_029766 |
| Entrez ID: | 76843 |
| Nearest Unigene: | Mm.189102 |
| Nearest Refseq: | NM_029766 |
| Nearest Ensembl: | ENSMUSG00000037474 |
| Gene Name: | denticleless E3 ubiquitin protein ligase |
| Gene Alias: | 2810047L02Rik|5730564G15Rik|L2dtl|Ramp |
| Gene Description: | denticleless E3 ubiquitin protein ligase |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
