Difference between revisions of "TSS:Mm 100120.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000152171.7:87 BC032884:87 | + | |all_trans=LF198986:86 MA434563:86 ENSMUST00000152171.7:87 BC032884:87 LF231418:105 MA466995:105 NM_183259:260 ENSMUST00000142089.1:299 AK020450:299 ENSMUST00000131566.1:323 AK004370:327 BC065414:429 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=86 |
|distance_to_tss=-277 | |distance_to_tss=-277 | ||
|end=115899879 | |end=115899879 | ||
| Line 12: | Line 12: | ||
|gene_description=small integral membrane protein 5 | |gene_description=small integral membrane protein 5 | ||
|gene_id=66528 | |gene_id=66528 | ||
| − | |gene_name= | + | |gene_name=Smim5 |
|gene_source=MGI:1913778 | |gene_source=MGI:1913778 | ||
|gene_symbol=Smim5 | |gene_symbol=Smim5 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_183259 | |nearest_refseq=NM_183259 | ||
|nearest_unigene=Mm.275740 | |nearest_unigene=Mm.275740 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=115899844 | |start=115899844 | ||
|start_of_center_position=115899861 | |start_of_center_position=115899861 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF198986 MA434563 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100120.1 | |tss_id=mm_100120.1 | ||
Latest revision as of 16:09, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 115899861 |
|---|---|
| End of the center position in the TSS region: | 115899862 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF198986 MA434563 |
|---|---|
| Distance: | 86 |
| Num_trans: | 12 |
| All_trans: | LF198986:86 MA434563:86 ENSMUST00000152171.7:87 BC032884:87 LF231418:105 MA466995:105 NM_183259:260 ENSMUST00000142089.1:299 AK020450:299 ENSMUST00000131566.1:323 AK004370:327 BC065414:429 |
TATA-Box annotation
| Distance to TSS: | -277 |
|---|---|
| Nearest PromoterID: | NM_183259 |
| Entrez ID: | 66528 |
| Nearest Unigene: | Mm.275740 |
| Nearest Refseq: | NM_183259 |
| Nearest Ensembl: | ENSMUSG00000048442 |
| Gene Name: | Smim5 |
| Gene Alias: | 2210020M01Rik |
| Gene Description: | small integral membrane protein 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
