Difference between revisions of "TSS:Mm 100182.1"
From referenceTSS
| Line 4: | Line 4: | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|cub= | |cub= | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-203 | |distance_to_tss=-203 | ||
|end=116624458 | |end=116624458 | ||
| Line 10: | Line 10: | ||
|entrez_id=217344 | |entrez_id=217344 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias=4732465I17Rik | + | |gene_alias=4732465I17Rik{{!}}Rhbdl6{{!}}cub |
|gene_description=rhomboid 5 homolog 2 | |gene_description=rhomboid 5 homolog 2 | ||
|gene_name=Rhbdf2 | |gene_name=Rhbdf2 | ||
| Line 23: | Line 23: | ||
|start_of_center_position=116624455 | |start_of_center_position=116624455 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-42(CCACTTATGGCC,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:11, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 116624455 |
|---|---|
| End of the center position in the TSS region: | 116624456 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -203 |
|---|---|
| Nearest PromoterID: | NM_001167680 |
| Entrez ID: | 217344 |
| Nearest Unigene: | Mm.89695 |
| Nearest Refseq: | NM_172572 |
| Nearest Ensembl: | ENSMUSG00000020806 |
| Gene Name: | Rhbdf2 |
| Gene Alias: | 4732465I17Rik|Rhbdl6|cub |
| Gene Description: | rhomboid 5 homolog 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -42(CCACTTATGGCC,+,0.00) |
